Phage RBP Database

Genbank accession

XCO56076.1 [GenBank]

Protein name

tail fiber protein

RBP type

TF

Evidence Phold

Probability 1,00

TSP

Evidence DepoScope

Probability 1,00

TSP

Evidence RBPdetect

Probability 0,91

TSP

Evidence RBPdetect2

Probability 0,95

Protein sequence

MPQGAILTNIGLSKISSATPLEQLNVVQLAVGDGAGGYPALTPDMTGLVNEVWRGTASNPIRDPNNANVLIFEAAIPASAGPFTIREQAIFDDAGDMIAIGQTSVVEKPDPNESVGVVATMRLHIALSNAEQVDLFYTDTTAAHHNSLTNRDEADSHPASAVTGVSEMRNGIIRGNVFPHEPEKTVKNGDYVPERTTHLNVLIGGEAAIVAMSPISVGAVSSLTDFSATIGGTLVTFTKTNTSNYLTLNDALTSPYITLNSQIEVKERVNGSGGDGIKFDVVLTASVTPNGFDIIQSVSEPSLSLKMRNESRRFSSFGVVKESSNLSTFCRDVALNKYDANYLDHGTYNYSGNLFLADGQMLSGKGSGNTISSNKGTRLKPTDSDAKIRLFPHAKLSDVFIDGEYSESNKAVDGIYIKPHDSGDTDYVPGDPTTLSCIWPKVSNVNIQKFFNNISIEGKSFNLWFEHLVSVAGRFKQVGGGESTLTACNLSDTTGQEIVFNDGGKISVHGGAIQNTNGGYPCIINKGKMLLQGVYMENARAGANNNGYLIDNYGTLTLVQPKSMAIADKAVRGRYGSKTYLRDVEFTGNNANTNEVFNGRGDNNNEGGGYLYFENLTLRSCLTTSINYIEHAIGGYSDKGYSIECGNEKTLYLNEGANLTDLTSSGGTLTANNTAEYLTNGESLRFVAASSAPSVTLTKTLRGLSGHLVMVRWAVLAKPSASDNTRFLANIGGDVTCAYVNVEFDADSANGNTDKWYYITTSAVLDPQLNEHVITCNLFTSLGASGSSNGTSHIDRIELVDCGLVHKP

Physico‐chemical properties

protein length:	808 AA
molecular weight:	86299,09210 Da
isoelectric point:	5,13537
aromaticity:	0,07550
hydropathy:	-0,22141

Domain architecture

XCO56076.1

1 808 aa

ATT 5–135 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR051934
Unmapped

IPR051934

IPR022225
ATT

IPR022225

XCO56076.1

1808 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_0194
STR

DC_0194

XCO56076.1

1808 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR051934	Unmapped	-	5	144	InterPro	Bacteriophage Tail Fiber Structural Protein	-	-	-	-
IPR022225	ATT	DC_0271	5	135	InterPro cluster	Phage tail fibre protein, N-terminal domain	Central	Medium	Text match	271 proteins / 271 hits

Proteins with similar domain architecture

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout

XCO56076.1

1 808 aa

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	326	326	0,9456
Central domain	327	639	314	0,9706
C-terminal	640	808	168	0,9854

N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Phage

Vibrio phage vB_VpaM_R19R [NCBI] · taxon 3161148

Viruses Duplodnaviria Heunggongvirae Uroviricota Caudoviricetes

Host

Vibrio sp. [NCBI] · taxon 678

cellular organisms Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales

Genbank protein accession

XCO56076.1 [NCBI]

Genbank nucleotide accession

PP839371.1 [NCBI]

CDS location

range 21888 -> 24314
strand +

CDS

ATGCCACAAGGTGCAATTTTAACAAACATTGGACTTTCAAAAATTTCAAGCGCAACGCCGCTAGAGCAGCTGAATGTTGTCCAGCTTGCTGTCGGTGATGGCGCTGGCGGTTATCCTGCTTTAACGCCGGATATGACCGGGTTGGTTAACGAGGTTTGGCGCGGAACCGCATCAAACCCAATCCGCGACCCGAACAATGCAAATGTATTGATTTTCGAAGCAGCGATTCCGGCCAGCGCAGGGCCATTTACAATCCGAGAACAGGCAATCTTTGATGACGCTGGCGACATGATAGCTATTGGTCAAACTTCCGTTGTTGAAAAGCCAGATCCAAATGAATCGGTTGGTGTAGTGGCCACAATGAGACTGCATATTGCTCTATCCAATGCAGAGCAGGTAGATCTTTTTTATACGGATACTACTGCAGCTCACCACAACTCATTAACTAACCGCGATGAGGCAGACTCGCATCCTGCTAGCGCAGTTACTGGTGTTAGTGAAATGCGTAATGGAATCATTCGTGGTAATGTTTTTCCACATGAGCCAGAGAAAACAGTTAAAAACGGCGACTATGTTCCAGAGAGAACCACACACCTTAACGTTTTGATTGGCGGCGAGGCTGCTATTGTTGCTATGTCTCCGATATCCGTAGGTGCTGTAAGTTCTTTGACGGATTTTAGTGCGACAATAGGTGGAACGCTCGTTACTTTCACAAAGACAAATACATCTAATTATTTAACTTTAAATGACGCATTAACAAGTCCATACATCACACTAAACTCACAGATAGAGGTAAAAGAGCGAGTTAACGGTAGCGGTGGGGATGGAATAAAGTTTGATGTAGTTCTCACCGCATCTGTAACGCCAAACGGATTTGACATTATCCAGAGTGTAAGCGAGCCCTCGTTGTCATTAAAAATGAGAAACGAATCAAGAAGATTTTCTTCTTTCGGTGTCGTAAAGGAGTCGTCAAACCTAAGCACTTTCTGTCGAGATGTTGCACTTAATAAGTACGATGCTAATTATCTAGATCATGGAACGTACAATTACTCTGGAAATTTATTTCTTGCTGATGGTCAGATGCTTAGCGGGAAAGGCTCAGGAAACACTATCTCATCAAACAAAGGGACAAGGCTAAAACCAACTGATTCTGATGCAAAAATTCGATTATTCCCGCATGCGAAATTGAGTGACGTTTTTATAGACGGCGAGTACTCGGAATCTAACAAAGCAGTGGATGGCATATACATTAAACCTCACGACTCGGGTGACACTGATTATGTGCCGGGTGACCCGACCACGCTGTCCTGTATTTGGCCAAAGGTATCAAATGTAAACATCCAAAAATTTTTCAACAATATATCAATCGAAGGTAAATCATTTAACTTGTGGTTTGAGCATCTTGTTTCGGTGGCTGGAAGATTTAAGCAAGTGGGTGGTGGAGAGTCAACATTGACAGCGTGCAACCTTTCAGACACAACAGGTCAGGAAATTGTGTTTAATGATGGTGGGAAAATCTCAGTTCATGGTGGAGCAATTCAAAACACAAACGGTGGATACCCTTGCATTATAAATAAAGGTAAAATGCTTCTTCAGGGCGTTTACATGGAAAATGCAAGAGCTGGCGCAAATAATAATGGTTATCTGATTGATAATTACGGAACGTTAACCCTAGTTCAGCCTAAGTCAATGGCAATAGCTGATAAAGCGGTTCGTGGTAGATATGGCAGTAAAACCTATTTACGTGATGTGGAATTTACAGGAAATAATGCCAACACCAATGAAGTTTTCAATGGTCGTGGTGACAATAACAATGAAGGTGGTGGATACCTTTATTTTGAAAACTTAACCCTTAGAAGCTGTCTTACAACATCTATAAATTATATAGAACATGCTATAGGTGGTTATAGCGACAAAGGTTACTCTATTGAATGTGGTAATGAAAAAACATTGTATCTGAACGAAGGGGCGAATCTGACTGATTTAACATCTTCAGGTGGCACACTGACTGCAAACAATACAGCAGAGTATTTAACAAATGGTGAATCGCTTCGGTTTGTAGCAGCATCATCAGCACCAAGTGTCACACTCACAAAAACATTGCGTGGCTTATCGGGTCACTTAGTTATGGTCAGATGGGCTGTTCTGGCTAAACCTTCAGCATCTGATAACACCAGGTTCCTAGCAAACATCGGTGGCGATGTAACTTGCGCTTATGTTAACGTTGAGTTTGACGCTGATTCGGCTAATGGGAATACTGACAAATGGTATTACATAACAACAAGCGCAGTTCTTGATCCTCAACTAAATGAACATGTCATTACTTGCAATTTATTTACCTCACTTGGCGCGTCAGGTTCAAGTAATGGCACTAGCCATATCGACAGAATTGAGCTTGTTGATTGCGGTTTAGTTCATAAGCCATAG

Protein

Domains

Tail Spike Domain Segmentation

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)