Protein

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UniProt accession
A0A1D8KJI3 [UniProt]
Protein name
Phage tail collar domain-containing protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,86
Protein sequence
MTYSYSQTPVYVSEGQTVRFKYRAPDQWNTTLSVRILIGEEPSVWYITTIPEDFAPDPYPFTPLEDTDLDTMYVYGDGSRPGEDIVTVSGLTPSTQANVSVFSSLPVDVNNFSIRVKKVSIGETAFGNWIIPAVNTLTVTNTDEIQVRLKSNILEGLQTTLDLTIGARSERWSLTTETSPPNVPVPFPDFDDINNADLDADVYSNILQIQGLNDTAIVSSLNSSLYFGISDTNDTETNDDGFDVLTGVTYVDSASTPTITNGQYLQLKFTTPDAANSLTSSQLSIGDQANGSSWNVTTGSFPSTTPNSFTFVDQNDVLEDALIGSQPAPVTGLAFAGGDDPGDVDVILVSTTGTQPRIKIQYAEGGESSIGLFPTKAGVGDKIVLYNKSSATFGGSVSTTIKVGTREILPWTLITNAGPDTDAVFSIPTNEVNQVPNSEIVSDIISVTSINRPITISATNGALISVDFAPPTSSTVTFDPAVNNTFRVFITSGPGLSDQVTTTVTVGTGTPNQFIWQVSNYAVAPPPPDLKGAWYSKKGAYLDSSGDVIESKEDGHAIGTVIAVLKRPDGSYGDLEGTESAGRLDARFPGYFECDGQSLKTADFPFLFDVIGYHYGGSGANFNLPDYRNRKITGTGEVDGNRGGSAFVLPEGGKSINQAGGIGGWWYVDDVDVSGPDPEEIIISDSTNDTTGTQSNFFSIGTVKTVFNADIIADVDFNIPTTGYVSATVGPLLETSVNVPAHSHLYVTGLCDGNTGDPLIEWNVRGSSKLGNHNTSTGRGQGSGALNDYRAFNDGTIASDPTPITSLWLERLREVDSSFQDEWEQISGADDLEVSVSTLIQTAAAGVNSENATRKASLQLSADTWWPSPFSDGPNLNDLESVSPLTDRNYDTAADGGSPGTGGRNVSAVIDTRPAYLRVDSYTPQVVDGAPPEVGNTNAGAANIKTHSHLLTLQPVLDPMEDYTYGNQNGAGTGKEGLGAANETVTVAFSQAEVGLELNPGVFTLNTSIKKPVPDVVFSPNRTVPLAPEFHKVKYLIKAF
Physico‐chemical
properties
protein length:1040 AA
molecular weight: 110586,28080 Da
isoelectric point:4,22259
aromaticity:0,08558
hydropathy:-0,23077

Domains

Domains [InterPro]
DC_0346
STR
1–1024
DC_0346
IPR037053
ATT
550–628
IPR037053
IPR011083
ATT
589–630
IPR011083
SSF88874
STR
590–649
SSF88874
A0A1D8KJI3
1 1040
Architecture
STR
ATT
STR
STR 1-549 | ATT 550-630 | STR 631-1024 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
A0A1D8KJI3
1 1040
Domain Start End Length (AA) Confidence
N-terminal 1 640 640 0,8148
Central domain 641 839 200 0,1410
C-terminal 840 1040 200 0,5134
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-640
Central
641-839
C-terminal
840-1040

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage S-CAM3
[NCBI] 		1883366 Uroviricota > Caudoviricetes > Pantevenvirales > Charybdisvirus > Charybdisvirus scam3
Host Synechococcus sp.
[NCBI] 		1131 cellular organisms > Bacteria > Bacillati > Cyanobacteriota/Melainabacteria group > Cyanobacteriota > Cyanophyceae

Coding sequence (CDS)

Coding sequence (CDS)

No CDS data available.

Genome Context

Genome Context

Tertiary structure

PDB ID
a27aa600c2562a427bb12842e81374a7d858a07d1eb16a2c075949a8f7df9b0c
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5459
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50