Phage RBP Database

UniProt accession

A0A1D8KJI3 [UniProt]

Protein name

Phage tail collar domain-containing protein

RBP type

TF

Evidence Phold

Probability 1,00

TSP

Evidence RBPdetect

Probability 0,86

TF

Evidence RBPdetect2

Probability 0,42

Protein sequence

MTYSYSQTPVYVSEGQTVRFKYRAPDQWNTTLSVRILIGEEPSVWYITTIPEDFAPDPYPFTPLEDTDLDTMYVYGDGSRPGEDIVTVSGLTPSTQANVSVFSSLPVDVNNFSIRVKKVSIGETAFGNWIIPAVNTLTVTNTDEIQVRLKSNILEGLQTTLDLTIGARSERWSLTTETSPPNVPVPFPDFDDINNADLDADVYSNILQIQGLNDTAIVSSLNSSLYFGISDTNDTETNDDGFDVLTGVTYVDSASTPTITNGQYLQLKFTTPDAANSLTSSQLSIGDQANGSSWNVTTGSFPSTTPNSFTFVDQNDVLEDALIGSQPAPVTGLAFAGGDDPGDVDVILVSTTGTQPRIKIQYAEGGESSIGLFPTKAGVGDKIVLYNKSSATFGGSVSTTIKVGTREILPWTLITNAGPDTDAVFSIPTNEVNQVPNSEIVSDIISVTSINRPITISATNGALISVDFAPPTSSTVTFDPAVNNTFRVFITSGPGLSDQVTTTVTVGTGTPNQFIWQVSNYAVAPPPPDLKGAWYSKKGAYLDSSGDVIESKEDGHAIGTVIAVLKRPDGSYGDLEGTESAGRLDARFPGYFECDGQSLKTADFPFLFDVIGYHYGGSGANFNLPDYRNRKITGTGEVDGNRGGSAFVLPEGGKSINQAGGIGGWWYVDDVDVSGPDPEEIIISDSTNDTTGTQSNFFSIGTVKTVFNADIIADVDFNIPTTGYVSATVGPLLETSVNVPAHSHLYVTGLCDGNTGDPLIEWNVRGSSKLGNHNTSTGRGQGSGALNDYRAFNDGTIASDPTPITSLWLERLREVDSSFQDEWEQISGADDLEVSVSTLIQTAAAGVNSENATRKASLQLSADTWWPSPFSDGPNLNDLESVSPLTDRNYDTAADGGSPGTGGRNVSAVIDTRPAYLRVDSYTPQVVDGAPPEVGNTNAGAANIKTHSHLLTLQPVLDPMEDYTYGNQNGAGTGKEGLGAANETVTVAFSQAEVGLELNPGVFTLNTSIKKPVPDVVFSPNRTVPLAPEFHKVKYLIKAF

Physico‐chemical properties

protein length:	1040 AA
molecular weight:	110586,28080 Da
isoelectric point:	4,22259
aromaticity:	0,08558
hydropathy:	-0,23077

Domain architecture

A0A1D8KJI3

1 1040 aa

ATT 550–630 · STR 631–649 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR037053
ATT

IPR037053

IPR011083
ATT

IPR011083

SSF88874
STR

SSF88874

A0A1D8KJI3

11040 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_0346
STR

DC_0346

A0A1D8KJI3

11040 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR037053	ATT	IPR037053	550	628	Merged direct domain	Phage tail collar domain superfamily	N-terminal	Low	Positional only	37 proteins / 37 hits
IPR011083	ATT	DC_0235	589	630	InterPro cluster	Phage tail collar domain	C-terminal	Medium	Text match	1051 proteins / 1051 hits
SSF88874	STR	SSF88874	590	649	Merged direct domain	SSF88874	Central	Low	Positional only	109 proteins / 109 hits

Proteins with similar domain architecture

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout

A0A1D8KJI3

1 1040 aa

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	640	640	0,8148
Central domain	641	839	200	0,1410
C-terminal	840	1040	200	0,5134

Note: Constraints were applied during segmentation.
Fixed 129 C-terminal predictions appearing before Central domain

N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Phage

Synechococcus phage S-CAM3 [NCBI] · taxon 1883366

Uroviricota Caudoviricetes Pantevenvirales Charybdisvirus Charybdisvirus scam3

Host

Synechococcus sp. [NCBI] · taxon 1131

cellular organisms Bacteria Bacillati Cyanobacteriota/Melainabacteria group Cyanobacteriota Cyanophyceae

No CDS data available.

Protein

Domains

Tail Spike Domain Segmentation

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)