Protein

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Genbank accession
QVD49376.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence RBPdetect
Probability 0,78
Protein sequence
MSDYFFNPAGQSFNTLFEPDPNGPAIEGFFNADGSYMRFASIANGSKIADVGHYRGDGWDVTNTWAGRGTVAYTVPSMGDVGSYDSMWSDASAVDWDGNPRTLHRLVFTLRRNGTWDITQYTRNFVSLAQRLEDNANAVSYHYPNGRVVASGQWAQSPRADFGDAYTVDYQTQEHTYGRLWIPRGAGPSGYQWQQGNYGSFNVQSGTIYGLGNNMPVNTDRSVEIGADMTTTANNYSQRDPNAALRRYNRGRILVTIRRNGNAVLQFRFNFVTLNVTQNMVIITREDGSGAGGGGGGGGGGGGGGDTGCVWVETWMDEQRQAKDIAIGEWIDGTDYNPDAIVSRQVRQNKVMPQPCYRMVSESGISIVASDSTPMTLQDGSTKMFGPEMVGELVLVDDYGVLRWEPVTSMEYVGIRDVVFFNVDDHSFFSGEHPGRRIATHNAVKQIQ
Physico‐chemical
properties
protein length:448 AA
molecular weight: 49333,79320 Da
isoelectric point:5,07222
aromaticity:0,11384
hydropathy:-0,49330

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QVD49376.1
1 448
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,0283
Central domain 11 306 297 0,8303
C-terminal 307 448 141 0,5305
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-306
C-terminal
307-448

Taxonomy

  Name Taxonomy ID Lineage
Phage Xanthomonas phage vB_XciM_LucasX
[NCBI] 		2829408 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QVD49376.1 [NCBI]
Genbank nucleotide accession
MW825358 [NCBI]
CDS location
range 275385 -> 276731
strand -
CDS
ATGTCTGATTACTTCTTCAATCCTGCTGGACAGTCGTTTAACACCCTTTTCGAGCCGGACCCTAACGGTCCGGCCATCGAGGGGTTCTTTAACGCAGACGGCAGCTACATGCGGTTTGCCTCCATTGCCAATGGTTCTAAGATTGCCGATGTGGGACATTACCGAGGTGATGGCTGGGATGTAACTAACACCTGGGCCGGTCGTGGTACGGTGGCCTATACGGTCCCCTCGATGGGGGATGTCGGTAGTTACGACTCGATGTGGTCTGATGCCTCAGCGGTGGACTGGGACGGTAACCCGCGCACCTTGCATCGTTTAGTCTTCACCTTACGCCGCAACGGGACGTGGGATATCACCCAATACACTCGCAACTTTGTCTCCCTGGCCCAGCGCCTGGAAGATAACGCCAATGCCGTTAGCTACCATTACCCCAATGGGCGGGTGGTGGCCTCTGGTCAATGGGCACAGTCTCCGCGAGCTGACTTTGGTGATGCCTATACCGTGGATTACCAGACCCAAGAGCACACCTATGGGCGCCTGTGGATTCCACGTGGCGCAGGTCCCAGCGGGTATCAATGGCAGCAGGGTAACTACGGTTCATTCAACGTCCAATCTGGCACGATCTATGGTCTTGGCAATAACATGCCAGTCAATACCGATCGCTCCGTTGAGATTGGTGCGGATATGACTACCACCGCCAACAACTACTCTCAACGAGATCCCAACGCGGCCTTGCGTCGGTATAACCGTGGTCGCATCTTAGTGACCATCCGTCGCAACGGCAATGCTGTACTTCAGTTCCGCTTCAACTTTGTCACCCTCAACGTAACCCAGAACATGGTCATCATCACCCGTGAAGATGGCTCTGGCGCCGGGGGTGGTGGAGGTGGCGGAGGTGGTGGCGGAGGCGGTGGTGACACCGGCTGTGTGTGGGTTGAGACCTGGATGGATGAGCAGCGTCAGGCCAAGGATATTGCCATTGGCGAGTGGATTGATGGTACGGATTACAATCCTGATGCCATTGTCTCGCGTCAAGTACGCCAGAACAAGGTCATGCCCCAGCCGTGCTATCGCATGGTCTCTGAGTCGGGTATTTCCATTGTGGCCTCTGACTCCACACCGATGACCCTGCAAGATGGCAGTACCAAGATGTTTGGTCCTGAGATGGTGGGCGAGTTGGTGTTGGTTGACGATTACGGGGTCCTGCGTTGGGAGCCGGTGACGTCAATGGAGTACGTGGGTATCCGCGATGTAGTCTTCTTTAACGTGGATGATCATTCGTTCTTCTCCGGTGAACACCCGGGTCGACGCATTGCCACCCACAACGCTGTCAAGCAAATTCAGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
5d2b2f50383e3292018966b80124c7102af78489a4fc88a93ebedca658a23bee
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,4314
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50