Phage RBP Database

Genbank accession

QIQ50267.1 [GenBank]

Protein name

tail fiber protein

RBP type

TF

Evidence UniProt/TrEMBL

Probability 1,00

TF

Evidence GenBank

Probability 1,00

TF

Evidence RBPdetect2

Probability 0,94

Seq2Symm

C3 confidence 0,046 truncated

C3	0,046
D3	0,006
C1	0,002

Predicted homo-oligomer symmetry (Seq2Symm, per-class probabilities; C1 = monomer, C2 = dimer, C3 = trimer).

Protein sequence

MKHFKEDAVTIKGSGGGSSKKKQHTPVEQPNTLRAKVRGRILDLIAYGPIKGLVNGLKSVYLDDTPVENEDGSTNFQGITLTTRNGTPDQDYIPGFRTVENTIEVNAEVKLATPVIRSLTNNDADAVAVTVQLAGLVQQLDNGDSVGYNVPILIEVRKDGGGWEQAVSYTINGKTTSPYPKTFRIDLKHYGPGDFDIRVRRVTQESTSSKLQDKLTWTLITEIIDRRFSYPNMALVGIDVDSELFGSQMPARSYDMYLSETQVPSNWDPETRVYTGIWDGTFKEAYHDNPAWAYYDLATHPIIGAGLESVDKWELYRIAQYCDALVPDGYGDMEPRFTINTVFSAQEDAITALNTLANVFRGMTYWGNNTVIPVADMPEDPVLTVGPGSVLEGDFTYAGTSIRERHSVAVVMWNDPDDAGKPVPEVYEDPISIAEYGWRETRVTAVGCNSRGQARRMAMWILDSERHETQTMSYTGTSEHAFLRPGNIIEVADPFVQGARMSGRLLEVAANQVRLDKAPTEAIAQIGGTWYLSVMLPDLSLSRHEVSSVDGDVIHLVDPLATLPLVGAIWGMYSAGLQLPYYRVVSNREDQATGMYQITATEYDPNKYSRVELGLNIPERPISLLPTGLIPSPSNLEFQVYTYFAGSSRHQGLLISWEPPRDVRVETFVLDVKDPSQAGFRTVYAGPGVSFDLTDAEAGNWTIRVRAVASTGKLSNWTSRNVQISQLLLPSPPDSVTVEVATFSITLTPRSAYPEAIWEFWRSTVALSAENIETNAQQLPTGNYLVDANLKPDTQYYYYVRGTNQYGKSTWFGVQGKTLNNFDDILDAVLEDVTNGELFELINSQIDTKATQIAIDEANAIVNQAMIGVNEQLTLVNTNITAIEGEITDLRSDVDGQLEVVNDTLTDLQGQIDNAIDALEYLNTNAYVAGNFVKVGSSLYQAKIDVPADPTNAKAPPNGTYWRDAGSVISSADGLAARVTVNEASITSINGTLTAQATTITGIQSTLNGKADASALTSLTTRVTAAEGLITSQGSAITSLTSTVAGKADSSALNALTTRVTAAEGTITSQGSALTSLTSTVNNKADASAVNALTTRVTAAEGTIVSQSGAITDLTSAVGTKADASALSALTTRVSTAEGTLTSQGSSITSLSNTLNTLSGSGTNLLVDTYSWLSSLVLPDMETSLVTVAGVAIAGSASGFGIRATSSSNNTAQEFMLVPFNSAAGWNLPLEAGNYLLSFYASSATAATVRMALYDGVLRYSLSQALTTTRTRYTLLITIPAATKAGFTVYPNMLGSASINILFDSFMIEKQAGNGVVGSPFVAGPSAQAVAANSAALTGLTTRVTAAEGTITSQAGSLVSLNSTINALGGTGTNLVPAEYSSFSSTLPPIYKGPAITVASETDATSYSGSALKITSAATGSNYLYLADAIDDFNMRLVPGGKYIVSFTARADVAKLMRVRVRAPNSGGSPIETTLSDVSVTTTATRFSFLATMPAAVVDRGVLVFYPTQPVAAGTTYLTDIMVEKQVGNSVNPSEFVPGNSARADIVSATAISSMDTRVTSAEGTITSHTGSITTLTNSIAGKADASALSLLSGTVTTQGNTIDSHSGQLTSLGNIAYGLSTENLISDPTFFAGAPVIVNSGTVATVVQRTDGGVPAGGPTMRLGKLAVPTIAGNNYIRFNPLESRKDATTRLSVIGGEVYYFSIDVYKAGSGGRQMGLWAQPYGAASEIIDHDWMVASPVSISTTDNAWVTLNGMVTIPAGANSINLNLRVSNGNAVTIYFANPKLYKRSAEQSATSTAITALDSRVGVTEGTLTSQGAAITSLTNTVNVVGGTGSNLVPVEYCTFKQEGLPPMATRVSTSLSLLLNTKAYNGWSLMVTDTLTAAGYFSLFAHIDDMNLRMKPLQKYIVSFWGMADEVRTINIRLRFVNAAGTHVEGVVGSVTLNPTWQRVSTVITAPSTVVDEAEILFYTNPVSVPSSSHFDGFMVEEQVGPSTQPSSFVPGSATTALTATAAAITSLTTRVTSAEGTITSQAGAVTAIQASLAAGGGAGSNLVPDTYSWPTSTTLPAVVTSSTAPTLTLIGVAVAAAQSGFGFKTTSGSTATTLWYLLCPSNGASGYNMALEPGNYMVSYYASAPGAARMQVRLYDGAAGPISGVQILTTTRTRYTAILNVPATMKAGLMIYPNAAGINGTQVTVDSVMVEKMNSGATTAAPSPFVAGPAAERVTAQASAISSMDTRVTSAEGTITSQSSSITSLTSRVGTAEANITTTATTLASTNGTLTSMWAMKINTNVNGKNFIAGMGAGITTVGGITQSEILFQADRFALLNTSTNGIQMPFFIESGITYITSAMIKNASIMAAQIASAQINTGHIGTAQIITAHIADAQITNAKIGSLAVDTLKIAGNAVTVPVASYTTTPSVTVVITIDANYPIMVIGSLTQANFSTISLKRNGVQLWSEVPVAGTVCCRGIVDSPGAGTHTYVLASTHSGNVNGSSLILLACKK

Physico‐chemical properties

protein length:	2505 AA
molecular weight:	264003,54330 Da
isoelectric point:	4,97287
aromaticity:	0,07106
hydropathy:	0,02910

Domain architecture

QIQ50267.1

1 2505 aa

ATT 99–226 · ATT 346–507 · STR 633–712 · ATT 730–829 · STR 1391–1525 · STR 1547–1618 · STR 1668–1797 · STR 1868–1988 · STR 2004–2066 · STR 2222–2292 · RBD 2293–2380 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR053171
Unmapped

IPR053171 G3DSA:2.60.120.260 G3DSA:1.20.5.340 G3DSA:2.60.120.260 G3DSA:2.60.120.260 G3DSA:1.20.5.340 G3DSA:1.20.5.340

IPR055385
ATT

IPR055385 IPR032876 IPR003961 IPR003961 IPR008979 IPR008979 IPR015406

IPR057587
ATT

IPR057587

QIQ50267.1

12505 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_0129
STR

DC_0129 DC_0338 DC_1045 DC_0338 DC_1278 DC_0237

DC_0338
STR

DC_0338 DC_2209

QIQ50267.1

12505 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR053171	Unmapped	-	1	1148	InterPro	Viral Tip Attachment Protein	-	-	-	-
IPR055385	ATT	DC_0360	99	226	InterPro cluster	Tip attachment protein J, HDII-ins2 domain	N-terminal	High	Text match	1136 proteins / 1139 hits
IPR032876	ATT	DC_0307	346	507	InterPro cluster	Tip attachment protein J	Central	Medium	Text match	1111 proteins / 1112 hits
IPR003961	STR	DC_0003	633	712	InterPro cluster	Fibronectin type III	Central	High	Text match	998 proteins / 1603 hits
IPR003961	STR	DC_0003	730	809	InterPro cluster	Fibronectin type III	Central	High	Text match	998 proteins / 1603 hits
IPR057587	ATT	DC_0130	732	829	InterPro cluster	Tip attachment protein J, second Ig-like domain	Central	Medium	Text match	309 proteins / 309 hits
G3DSA:2.60.120.260	STR	G3DSA:2.60.120.260	1391	1524	Merged direct domain	G3DSA:2.60.120.260	Central	Low	Positional only	264 proteins / 264 hits
IPR008979	STR	IPR008979	1406	1525	Merged direct domain	Galactose-binding-like domain superfamily	Central	Low	Positional only	24 proteins / 24 hits
G3DSA:1.20.5.340	STR	G3DSA:1.20.5.340	1547	1618	Merged direct domain	G3DSA:1.20.5.340	Central	Low	Positional only	38 proteins / 38 hits
G3DSA:2.60.120.260	STR	G3DSA:2.60.120.260	1668	1797	Merged direct domain	G3DSA:2.60.120.260	Central	Low	Positional only	264 proteins / 264 hits
G3DSA:2.60.120.260	STR	G3DSA:2.60.120.260	1868	1988	Merged direct domain	G3DSA:2.60.120.260	Central	Low	Positional only	264 proteins / 264 hits
IPR008979	STR	IPR008979	1899	1988	Merged direct domain	Galactose-binding-like domain superfamily	Central	Low	Positional only	24 proteins / 24 hits
G3DSA:1.20.5.340	STR	G3DSA:1.20.5.340	2004	2066	Merged direct domain	G3DSA:1.20.5.340	Central	Low	Positional only	38 proteins / 38 hits
G3DSA:1.20.5.340	STR	G3DSA:1.20.5.340	2222	2292	Merged direct domain	G3DSA:1.20.5.340	Central	Low	Positional only	38 proteins / 38 hits
IPR015406	RBD	DC_0135	2269	2380	InterPro cluster	Tip attachment protein J, central straight fiber domain	C-terminal	High	Text match	1265 proteins / 1266 hits

Proteins with similar domain architecture

Phage

Pseudomonas phage Lana [NCBI] · taxon 2530172

Uroviricota Caudoviricetes Lanavirus Lanavirus lana

Host

Pseudomonas sp. [NCBI] · taxon 306

Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp.

No CDS data available.

Protein

Domains

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)