Phage RBP Database

Genbank accession

YP_009790035.1 [GenBank]

Protein name

hypothetical protein

RBP type

TSP

Evidence DepoScope

Probability 1,00

TSP

Evidence RBPdetect

Probability 0,91

TSP

Evidence RBPdetect2

Probability 0,98

Protein sequence

MALEKLTQVKGSVSLYLRQLINKTISGTTNYLGYWGLTLSNSGLAGATVKFGGKVWELRSDNADISSSEPSDELWIDCGTDGFTFKSLADAKASLRIEGQGFYISSYHEGLNKGGGWFTWVPSSTAVEDDFLVIGTGSAGRHHRSVENGTVTPSDAGARGEGASSATQDTLAFLKVAACDYNVTCDYTDAGYYLTDQVSLSGTRRNWKTINLNGCDIQFVFDGSSSRNCFQMGDFSEIYGGTILNNTDPSNSNGDGSFDNPVAVGTTANVAAKNVKIHTLEIYQNLEKPCIGIWGASHDIEVDNIFLRSSERAIIGVLAHWGVDTGDFTTASVSLHPYNLKMSNVTCKNFSGLAADSFAICLSGVYNVTVDNLTAENMIGGCKVQPGTVGNSLASAEVREKILTNIRVNNINTFNVQQPAFADWSGDGVAWSGGSYDIESDIEFDGVNANESPTGGTAFIVQRLSNVTAKNLRIKNFFRAFHVLGIDGDEASDVTIDDLKAEDIKTIGGYVSGVYCKRFKLTSSEIKDCSDGTSTIANESSCLLIESPDFTIENTRLGADSSEDAYRLLALTATATGGLVKDSEYKDVRSGGYHLFNDVPVTTQINTTTPDGFNMLSSNVVLSRLDYVEVGLNLSSNQSVSTGVSSTLNLDSVDHDYYSNYNSLGFLPKTTSMYTVEGLITLRDVLGEGTVNVDVYSGSTRIKRLVSESVNLDSSRNAGVKLSGSFKAEAGSVITLKLTQDIAASLELDSDNNTGTWVDFRQL

Physico‐chemical properties

protein length:	763 AA
molecular weight:	81873,64360 Da
isoelectric point:	4,65536
aromaticity:	0,08650
hydropathy:	-0,18322

Domain architecture

YP_009790035.1

1 763 aa

RBD 85–145 · STR 408–558 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR059934
RBD

IPR059934 IPR011050

IPR011050
STR

IPR011050

YP_009790035.1

1763 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_1719
ATT

DC_1719 DC_1579

YP_009790035.1

1763 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR059934	RBD	DC_0541	85	145	InterPro cluster	Phage tail protein-like, small four-stranded beta-sheet domain	C-terminal	Low	Positional only	683 proteins / 690 hits
IPR011050	STR	IPR011050	408	558	Merged direct domain	Pectin lyase fold/virulence factor	Central	Low	Positional only	572 proteins / 572 hits
IPR011050	STR	IPR011050	408	555	Merged direct domain	Pectin lyase fold/virulence factor	Central	Low	Positional only	572 proteins / 572 hits

Proteins with similar domain architecture

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout

YP_009790035.1

1 763 aa

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	166	166	0,9853
Central domain	167	619	454	0,9893
C-terminal	620	763	143	0,9859

N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Phage

Marinomonas phage CPP1m [NCBI] · taxon 1965370

Uroviricota Caudoviricetes Autographivirales Colwellvirinae Murciavirus

Host

Marinomonas mediterranea [NCBI] · taxon 119864

cellular organisms Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales

Genbank protein accession

YP_009790035.1 [NCBI]

Genbank nucleotide accession

NC_047821 [NCBI]

CDS location

range 40950 -> 43241
strand +

CDS

TTGGCACTAGAAAAACTAACACAAGTTAAAGGTAGCGTCTCATTATACCTTAGACAGCTTATTAATAAAACTATCTCTGGGACAACTAATTACCTTGGTTACTGGGGACTGACACTATCTAATTCAGGTCTAGCTGGAGCAACCGTTAAGTTCGGCGGTAAGGTCTGGGAGCTAAGATCAGATAATGCAGACATCAGCTCATCTGAACCGAGTGATGAATTATGGATAGACTGCGGAACTGACGGGTTTACGTTCAAGTCGCTTGCAGATGCTAAAGCTTCTCTTAGAATAGAAGGTCAGGGATTCTATATAAGCTCTTATCATGAAGGCTTAAACAAGGGCGGTGGCTGGTTCACTTGGGTGCCATCTTCAACAGCGGTCGAGGATGACTTTCTTGTTATCGGCACTGGCTCAGCAGGCAGGCACCACAGATCAGTTGAAAACGGGACAGTTACGCCGTCAGATGCAGGAGCAAGAGGGGAAGGGGCATCATCAGCTACGCAAGATACGCTCGCATTCTTAAAAGTCGCAGCATGCGACTACAATGTCACTTGTGACTATACAGATGCAGGGTACTACTTGACAGATCAAGTGTCGTTGAGTGGAACAAGACGAAATTGGAAAACAATCAATCTTAATGGGTGCGATATTCAGTTCGTGTTCGATGGGTCGTCCTCACGAAACTGTTTCCAAATGGGAGACTTCTCTGAAATATACGGAGGGACGATCCTAAACAATACTGATCCTAGTAACTCAAACGGGGATGGCAGCTTTGATAATCCTGTGGCTGTAGGCACGACAGCTAATGTAGCAGCTAAAAACGTCAAGATTCATACACTAGAGATCTATCAGAATCTAGAGAAGCCCTGCATAGGCATATGGGGAGCGTCACATGATATAGAGGTTGACAACATCTTCCTACGCAGCAGCGAAAGAGCCATTATAGGGGTCTTAGCTCATTGGGGGGTAGATACGGGCGATTTCACGACAGCTTCGGTTTCTTTGCATCCGTACAATTTGAAGATGAGTAATGTTACATGTAAAAACTTTTCGGGTCTAGCTGCGGACAGCTTCGCCATATGCCTCAGTGGAGTTTACAACGTAACTGTAGACAACTTGACAGCAGAGAATATGATAGGAGGCTGCAAAGTGCAGCCAGGGACTGTGGGTAATTCGTTAGCTTCGGCAGAAGTTCGAGAGAAAATTCTAACTAATATCCGAGTTAACAACATTAATACATTCAATGTACAACAACCAGCGTTTGCAGATTGGTCAGGCGATGGGGTTGCTTGGAGCGGGGGTTCTTATGATATCGAATCAGACATTGAATTTGATGGGGTAAATGCTAATGAAAGTCCTACAGGTGGGACAGCTTTTATAGTGCAGCGTCTTTCTAATGTCACAGCAAAGAACTTGAGAATCAAGAACTTTTTCAGAGCGTTTCATGTCTTGGGTATAGATGGGGACGAGGCATCAGACGTAACAATTGACGACTTGAAAGCAGAGGATATTAAAACTATCGGTGGTTATGTCTCTGGCGTTTATTGCAAGAGATTTAAGCTAACAAGCTCTGAAATTAAAGACTGTTCAGACGGAACTAGCACTATAGCGAATGAGTCTAGCTGTCTACTGATAGAGAGTCCTGATTTTACTATAGAGAATACTAGACTAGGAGCTGATTCGAGCGAGGATGCTTATCGACTACTAGCTCTTACTGCGACAGCGACAGGTGGTTTAGTTAAAGATTCTGAGTATAAAGACGTAAGGAGTGGGGGCTATCATCTATTCAATGATGTTCCGGTCACTACTCAAATAAATACTACAACCCCTGACGGTTTCAACATGCTATCTTCTAATGTAGTTCTAAGTAGATTGGATTACGTAGAGGTTGGATTAAACCTCTCTAGTAATCAGTCTGTCTCGACTGGTGTATCTAGTACTCTGAACCTAGATAGTGTTGATCATGACTACTACAGTAACTACAATTCGCTTGGGTTCCTTCCAAAAACAACCTCTATGTATACGGTTGAAGGGCTAATAACGCTACGGGATGTATTAGGGGAAGGTACTGTGAACGTTGATGTTTACTCGGGATCTACGCGTATTAAAAGACTAGTATCAGAGAGCGTAAACCTCGACAGTTCAAGGAACGCTGGTGTGAAGCTTAGTGGGTCTTTTAAAGCGGAAGCTGGTTCAGTAATTACACTGAAACTAACTCAGGACATAGCCGCATCACTGGAGCTTGATTCAGACAACAACACAGGTACATGGGTAGATTTCAGGCAACTATGA

Protein

Domains

Tail Spike Domain Segmentation

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)