Protein

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Genbank accession
YP_009812543.1 [GenBank]
Protein name
tail fiber protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
TF
Evidence UniProt/TrEMBL
Probability 1,00
Protein sequence
MANVSDKSILTAAGKALLAQLNAEEKALVIDKMIFANVPNRPEYPQPDDVVPTDNVVHQAAVEQRGRLSEDSVIYSTTLASNEGPFEFNWTGAYCSEYGVLVTIDHHSLTPKTVDEPGVSGNTLVRSVVLEYKDIAEITNITVDASTWQYNATPRMKKMDDDVAQANIDQNGKDWFIEEGFLVTPQASAFSIKAGAGYVSGNRVALEFDRSIQVPNKPSFIYIDAHREGTPTGEQVTLFDFVVSAEEKDDYIDSSTGKDVAHFICKIAQVLGDGSVSDLRLEGESAGKDWVSGNFNQVFQSVSSLKKAEVKAGTLVQTISYHDGWAAKLRHPVGGGLYFITEVNSVPALDGKFDFHVGNGLAAVLTKSSVLNVYQAGAYGDKSYDDQPIIQHVLDYAESNNKRVVEVPDGHYSLYSTLSVPRSVQLIGNGCETWTHDEGTVFWGEHNDVIVMVGRENMPSTYRNRGMHIEAFKVVGRDMVGCGVSTPRTSKNSERPSAYNWSARRVVVKQSLVGFQYDSTWHVQADQCVALDCDIGHRYQGIGGTSSNFNGLLAYSTRKGYEFLGDGWTYSSWNSCGSDGSEIALDLKGGSFRGSSFRNFGFENTSRIGLLIDNSNAIAIFDGLNIGIHDNPSVTMISVNSAELVKLNDVRCTSSVLNQCRFISINQIGSLGRVVFDNLSLYSGNGGDVGDIYHEKVMLRDSNIDGVKYTHAVGGLDGKDSSLVGYTSSDQNKSNLAVIATHILAQADVDGASRYLTGLPVFDTSNIPDFETVKFTNVGGGEFGFRTEEYTAGTGIVRNPTLSPTTTVRLTTPGDYVVFQKRPDGKLYEIEKFVV
Physico‐chemical
properties
protein length:835 AA
molecular weight: 90999,23970 Da
isoelectric point:5,04346
aromaticity:0,09341
hydropathy:-0,25521

Domains

Domains [InterPro]
DC_0787
STR
1–525
DC_0787
IPR022225
ATT
8–147
IPR022225 IPR012334
IPR011050
STR
362–667
IPR011050
IPR024535
ENZ
371–445
IPR024535
YP_009812543.1
1 835
Architecture
ATT
STR
ATT 1-147 | STR 148-704 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009812543.1
1 835
Domain Start End Length (AA) Confidence
N-terminal 1 387 387 0,9937
Central domain 388 721 335 0,9719
C-terminal 722 835 113 0,9572
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-387
Central
388-721
C-terminal
722-835

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage 1.202.O._10N.222.45.E8
[NCBI] 		1881262 Uroviricota > Caudoviricetes > Peduoviridae > Canoevirus canoe >
Host Vibrio cyclitrophicus
[NCBI] 		47951 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009812543.1 [NCBI]
Genbank nucleotide accession
NC_048066.1 [NCBI]
CDS location
range 27351 -> 29858
strand +
CDS
ATGGCAAATGTATCTGATAAATCAATTTTAACCGCAGCAGGTAAAGCGCTATTGGCGCAGCTTAATGCGGAAGAAAAGGCGCTGGTCATCGATAAGATGATTTTTGCGAATGTGCCAAACCGCCCAGAGTACCCGCAACCGGATGATGTGGTACCGACTGATAATGTGGTTCATCAAGCTGCCGTTGAGCAACGTGGCCGACTTTCGGAAGATTCGGTGATTTACAGCACTACGCTTGCCAGTAATGAAGGGCCGTTTGAGTTCAACTGGACGGGTGCTTACTGTTCTGAATACGGTGTTTTAGTAACGATTGACCACCATTCACTGACGCCAAAAACGGTCGATGAGCCGGGTGTTTCGGGTAATACGTTGGTGCGTTCGGTTGTGCTTGAGTACAAGGATATTGCTGAAATCACCAATATCACGGTGGACGCTTCAACATGGCAATACAACGCAACACCACGCATGAAGAAAATGGACGATGATGTAGCCCAAGCGAACATCGACCAAAACGGCAAAGATTGGTTTATCGAAGAAGGTTTCTTGGTTACGCCTCAAGCCTCTGCATTCAGTATTAAAGCGGGTGCCGGTTATGTGTCGGGCAACCGTGTCGCCCTTGAATTTGATCGCAGCATTCAAGTACCGAACAAGCCATCGTTCATTTATATCGATGCGCACCGCGAAGGAACGCCAACAGGTGAGCAAGTTACGTTGTTCGATTTTGTTGTGTCTGCAGAAGAGAAAGACGATTACATCGACTCTTCAACGGGTAAGGATGTTGCGCACTTTATTTGCAAAATTGCGCAAGTGTTGGGTGATGGTTCGGTTAGTGACTTAAGGCTGGAGGGGGAGAGTGCGGGGAAAGATTGGGTCTCTGGGAATTTTAATCAAGTCTTTCAATCTGTTTCATCTCTGAAAAAAGCAGAAGTTAAGGCAGGTACATTGGTTCAAACAATCTCTTATCATGACGGATGGGCAGCCAAGCTTCGTCATCCTGTTGGGGGTGGTTTGTATTTTATTACTGAGGTGAACAGTGTTCCTGCTCTTGATGGTAAGTTTGACTTCCACGTAGGTAACGGTTTAGCCGCTGTATTAACAAAATCATCGGTGCTTAATGTTTATCAAGCGGGTGCATATGGAGATAAGTCTTATGATGATCAACCGATTATTCAGCATGTTTTAGATTATGCAGAAAGCAATAATAAACGGGTGGTTGAAGTACCAGATGGCCACTACTCCCTCTATTCTACTCTTTCGGTTCCTAGGTCTGTACAGCTAATCGGCAATGGTTGTGAAACATGGACCCACGATGAGGGCACAGTTTTTTGGGGGGAACATAATGATGTTATCGTTATGGTTGGTCGAGAAAACATGCCAAGCACCTACCGAAATAGAGGTATGCACATTGAAGCATTTAAGGTGGTCGGTCGTGATATGGTGGGATGTGGCGTATCAACTCCAAGAACATCAAAAAATTCTGAAAGACCGTCGGCATACAATTGGTCAGCAAGGCGAGTCGTAGTGAAACAAAGCCTTGTTGGATTTCAATATGATAGTACATGGCATGTACAGGCAGACCAGTGTGTGGCGTTAGATTGCGACATTGGACACCGTTATCAAGGGATCGGAGGAACAAGCTCAAACTTTAATGGGCTTCTAGCTTACAGCACTCGGAAAGGATATGAATTTTTAGGAGATGGTTGGACATACAGTTCTTGGAATTCTTGTGGCTCAGATGGTTCAGAAATCGCGCTAGATTTAAAAGGGGGATCATTCAGAGGTTCGTCATTTCGTAACTTTGGATTTGAAAACACATCAAGAATTGGATTGCTGATCGACAATTCTAACGCAATTGCCATTTTTGACGGTCTTAATATTGGAATACATGATAATCCCTCCGTCACCATGATTTCCGTCAATAGTGCTGAGCTTGTTAAGCTGAATGATGTTCGTTGTACATCCAGCGTTCTAAATCAGTGTCGGTTTATCTCAATTAACCAAATAGGCTCACTTGGCCGAGTTGTCTTTGATAATTTATCTCTTTATAGCGGTAATGGTGGTGATGTCGGTGATATTTACCACGAAAAAGTCATGCTCAGAGATAGTAATATCGACGGGGTTAAATACACCCACGCAGTAGGTGGGCTGGATGGTAAAGACTCAAGTTTAGTAGGTTATACATCTAGCGATCAGAATAAATCTAATTTGGCTGTTATAGCTACACATATTTTAGCTCAAGCGGATGTCGACGGAGCCAGTCGTTATCTTACAGGTTTGCCTGTTTTTGATACGTCAAACATTCCAGATTTTGAAACCGTTAAATTCACGAATGTTGGCGGTGGTGAGTTTGGATTTAGAACTGAAGAATATACAGCTGGAACGGGAATTGTTAGAAATCCTACGCTGTCACCAACAACAACGGTAAGGTTGACTACTCCTGGAGATTACGTGGTCTTCCAAAAGAGACCTGATGGTAAGCTTTATGAAATTGAAAAGTTTGTGGTTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
74b8b5340cbc4ecda1bc2e92992a1bc48b414d002d253a505b698dc73b404416
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7978
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
A major lineage of nontailed dsDNA viruses as unrecognized killers of marine bacteria Kauffman,K.M., Hussain,F.A., Yang,J., Arevalo,P., Brown,J.M., Chang,W.K., VanInsberghe,D., Elsherbini,J., Cutler,M.B., Kelly,L. and Polz,M.F. 2018-01-24 — GenBank