Protein

View in Explore
Genbank accession
YP_009599331.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,58
Protein sequence
MKVINGGIPGKPQDSVEIGHVYSQLALIMAKRAEQLRQTDEKVNKVVDRISAQRDRDYGNLERQLEDHINTKGLKHGENLSTLGLQMVNDFPFGSSENILTGDGWKTYLDPQALTDALQQWQYDEDPRVLARGNDFYTKNNLHLDTLFDARGIKDTDFVDEWKDFTPVVYHGGVIGPVNVKSGITYLPTLPYIQNHSVVEGVSLGVTDSDITAYGWGSKTLKRESTNEYFLLDDYHQHQPLSFTAPGTAGSLAKELAWLEINNDLQTGYGATCYAYDQGIALGLRKVVFGNKLSFDDTFTFTVNGRVMNDQIVTVPWDEYFPGKAVTVLHEGKVYGGLEHDEDLNQLTMFLLVHLNVDGITNLYVFRWEGNYSANACTLTLHPYKDDLLDVLPDNHAFHPVYGRGVIKSTGGHISGRHYGHRTYFLEHSYPHTSFRDLLDSREELLAGSILTEQRLVTNRHYSPLGNSLGRMLLTNDHTVINGQVHADGDWSHYLCHYDGKVGVGGNNFRFNHPVLIFPMAERTMLSREYVNTIQSNGKVGLAGTVWSNENDYQGVLDARGKVGGDIYGKPGYIVPEDLETFKAEHQEWLDFRGGLGYTALVVMQDGEQLHGLEIRADHLRYLDVAYLDVKLTVNGEYHLTRVGDRSVLNESEPAFKHVSNNRRWLMTDFYVHFHNEECHVVIQNPFKHVPGIFEFRLNNGNIGSVIKYVPQPDKAGLIDFAPVVMTLSGPCIPKRVEPGKGEYSNYYGVSVDRYAGEFNTTGLLAIEPGTRMEVNGDPFDIPPGLVARYTPNTKQYIYLTLTNGVVSVLVSGVPVERGQLYAIVETNGTVDLKIT
Physico‐chemical
properties
protein length:836 AA
molecular weight: 93735,06510 Da
isoelectric point:5,50823
aromaticity:0,10407
hydropathy:-0,36208

Tail Spike Domain Segmentation

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout
YP_009599331.1
1 836 aa
Domain Start End Length (AA) Confidence
N-terminal 1 136 136 0,9866
Central domain 137 441 306 0,6074
C-terminal 442 836 394 0,4866
N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Taxonomy

Phage
Vibrio phage pTD1 [NCBI] · taxon 1938577
Uroviricota Caudoviricetes Chimalliviridae Tidunavirus Tidunavirus pTD1
Host
Vibrio parahaemolyticus [NCBI] · taxon 670
cellular organisms Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales

Coding sequence (CDS)

Genbank protein accession
YP_009599331.1 [NCBI]
Genbank nucleotide accession
NC_041916 [NCBI]
CDS location
range 40028 -> 42538
strand -
CDS
ATGAAAGTCATTAATGGAGGTATCCCGGGCAAACCTCAGGACTCCGTAGAGATTGGTCATGTCTACAGCCAGCTCGCTTTGATTATGGCGAAGCGTGCGGAGCAATTAAGACAGACTGATGAGAAAGTCAACAAAGTGGTTGACCGTATCAGTGCTCAACGTGACCGTGATTACGGGAACTTAGAACGACAACTAGAAGACCATATCAACACCAAGGGATTGAAGCACGGAGAAAACCTCTCCACCCTAGGGTTGCAAATGGTAAACGACTTCCCCTTTGGTTCCTCAGAAAACATCTTGACGGGTGACGGATGGAAAACGTATCTGGATCCGCAAGCACTGACCGATGCTTTACAACAATGGCAGTATGACGAGGACCCAAGAGTACTGGCTCGTGGTAACGACTTCTACACTAAGAACAATTTGCACTTAGATACGTTGTTTGATGCACGTGGGATCAAAGACACTGACTTCGTGGATGAATGGAAAGATTTCACACCAGTGGTTTACCACGGCGGAGTAATTGGTCCGGTTAACGTTAAGTCAGGTATCACTTATTTACCAACCTTGCCTTACATTCAAAACCACAGCGTGGTGGAAGGTGTGAGTCTGGGGGTAACTGACAGTGACATCACTGCTTACGGATGGGGTAGTAAAACGCTTAAACGCGAATCGACCAATGAGTACTTTTTGTTGGACGACTACCATCAGCATCAACCGCTCTCCTTTACGGCTCCGGGAACCGCGGGCAGTTTGGCTAAAGAGTTAGCTTGGTTAGAGATCAACAACGATCTACAAACAGGCTATGGTGCAACGTGTTACGCTTACGACCAAGGGATTGCTCTGGGATTACGTAAAGTCGTCTTCGGTAATAAACTGTCTTTCGACGACACCTTTACGTTCACGGTAAACGGTCGTGTGATGAATGACCAAATCGTCACGGTACCTTGGGATGAGTATTTCCCGGGTAAAGCCGTGACGGTCCTACACGAAGGTAAAGTCTACGGTGGTTTAGAACACGATGAAGATTTGAATCAGCTGACGATGTTCTTGTTGGTTCATCTCAACGTTGATGGTATCACTAATCTTTATGTGTTCCGTTGGGAAGGGAATTACAGTGCTAATGCATGCACGTTGACATTGCATCCATATAAAGACGATCTCTTGGATGTATTGCCAGACAACCATGCGTTCCATCCGGTCTACGGTCGTGGTGTAATCAAATCGACAGGCGGACACATCAGCGGTCGTCATTACGGTCATCGCACTTACTTCTTGGAACACTCGTACCCACACACCAGTTTCCGAGACTTATTGGATAGTCGAGAAGAGTTGCTCGCAGGCTCTATTTTGACGGAACAACGTCTGGTCACTAACCGACATTATTCTCCATTAGGAAACAGCTTGGGTCGAATGTTGTTGACCAATGATCACACGGTCATCAATGGGCAAGTTCACGCGGATGGGGATTGGTCTCACTATTTGTGTCATTACGACGGCAAAGTGGGTGTCGGTGGGAACAACTTCCGATTCAATCACCCTGTACTCATTTTCCCGATGGCAGAACGTACTATGTTGTCTCGTGAATACGTCAACACCATCCAGTCAAATGGTAAGGTGGGGTTAGCAGGCACGGTTTGGTCGAATGAGAACGACTACCAAGGAGTCCTAGACGCTCGTGGTAAAGTAGGTGGCGATATCTACGGGAAACCGGGTTACATCGTCCCTGAGGATTTAGAGACGTTTAAAGCGGAACATCAAGAGTGGTTAGACTTCCGTGGTGGTTTAGGTTACACCGCTTTGGTGGTTATGCAAGACGGTGAGCAATTACACGGTCTGGAAATCCGTGCTGATCATCTTCGTTATTTAGACGTTGCTTACTTGGACGTGAAATTAACGGTGAATGGGGAATACCACTTAACTCGTGTAGGTGACCGAAGTGTTCTTAATGAAAGTGAACCTGCTTTCAAACACGTGTCCAATAACCGACGTTGGTTAATGACAGACTTCTATGTCCATTTCCATAATGAAGAATGTCATGTGGTAATTCAAAACCCATTTAAACACGTACCGGGTATTTTTGAATTCCGTCTCAACAACGGTAACATTGGTTCGGTGATCAAATACGTTCCACAACCGGATAAAGCAGGGTTAATTGATTTTGCTCCGGTAGTGATGACGTTAAGCGGACCTTGTATCCCTAAACGTGTGGAACCGGGTAAGGGCGAGTACTCTAACTATTATGGGGTGAGTGTGGACCGTTACGCTGGTGAGTTTAACACCACGGGGTTGTTGGCAATTGAACCGGGTACACGAATGGAGGTCAATGGCGACCCATTTGACATTCCACCGGGCTTAGTGGCACGTTACACACCTAACACAAAACAATACATCTACCTCACCCTAACCAATGGTGTTGTGTCTGTGTTGGTGAGTGGAGTTCCTGTTGAACGTGGTCAGCTTTACGCCATAGTAGAAACCAACGGAACCGTTGATTTAAAAATCACATAA

Genome Context

Tertiary structure

YP_009599331.1
ESMFold structure
Source ESMFold
pLDDT 34.1
Oligomeric state monomer
Download structure

Literature

Title Authors Date PMID Source
Complete Genome Sequence of Vibrio Parahaemolyticus Bacteriophage pTD1 Midorikawa,Y. and Sano,M. 2017-07-13 — GenBank