Protein

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Genbank accession
YP_009599331.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MKVINGGIPGKPQDSVEIGHVYSQLALIMAKRAEQLRQTDEKVNKVVDRISAQRDRDYGNLERQLEDHINTKGLKHGENLSTLGLQMVNDFPFGSSENILTGDGWKTYLDPQALTDALQQWQYDEDPRVLARGNDFYTKNNLHLDTLFDARGIKDTDFVDEWKDFTPVVYHGGVIGPVNVKSGITYLPTLPYIQNHSVVEGVSLGVTDSDITAYGWGSKTLKRESTNEYFLLDDYHQHQPLSFTAPGTAGSLAKELAWLEINNDLQTGYGATCYAYDQGIALGLRKVVFGNKLSFDDTFTFTVNGRVMNDQIVTVPWDEYFPGKAVTVLHEGKVYGGLEHDEDLNQLTMFLLVHLNVDGITNLYVFRWEGNYSANACTLTLHPYKDDLLDVLPDNHAFHPVYGRGVIKSTGGHISGRHYGHRTYFLEHSYPHTSFRDLLDSREELLAGSILTEQRLVTNRHYSPLGNSLGRMLLTNDHTVINGQVHADGDWSHYLCHYDGKVGVGGNNFRFNHPVLIFPMAERTMLSREYVNTIQSNGKVGLAGTVWSNENDYQGVLDARGKVGGDIYGKPGYIVPEDLETFKAEHQEWLDFRGGLGYTALVVMQDGEQLHGLEIRADHLRYLDVAYLDVKLTVNGEYHLTRVGDRSVLNESEPAFKHVSNNRRWLMTDFYVHFHNEECHVVIQNPFKHVPGIFEFRLNNGNIGSVIKYVPQPDKAGLIDFAPVVMTLSGPCIPKRVEPGKGEYSNYYGVSVDRYAGEFNTTGLLAIEPGTRMEVNGDPFDIPPGLVARYTPNTKQYIYLTLTNGVVSVLVSGVPVERGQLYAIVETNGTVDLKIT
Physico‐chemical
properties
protein length:836 AA
molecular weight: 93735,06510 Da
isoelectric point:5,50823
aromaticity:0,10407
hydropathy:-0,36208

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009599331.1
1 836
Domain Start End Length (AA) Confidence
N-terminal 1 136 136 0,9866
Central domain 137 441 306 0,6074
C-terminal 442 836 394 0,4866
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-136
Central
137-441
C-terminal
442-836

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage pTD1
[NCBI] 		1938577 Uroviricota > Caudoviricetes > Chimalliviridae > Tidunavirus > Tidunavirus pTD1
Host Vibrio parahaemolyticus
[NCBI] 		670 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009599331.1 [NCBI]
Genbank nucleotide accession
NC_041916 [NCBI]
CDS location
range 40028 -> 42538
strand -
CDS
ATGAAAGTCATTAATGGAGGTATCCCGGGCAAACCTCAGGACTCCGTAGAGATTGGTCATGTCTACAGCCAGCTCGCTTTGATTATGGCGAAGCGTGCGGAGCAATTAAGACAGACTGATGAGAAAGTCAACAAAGTGGTTGACCGTATCAGTGCTCAACGTGACCGTGATTACGGGAACTTAGAACGACAACTAGAAGACCATATCAACACCAAGGGATTGAAGCACGGAGAAAACCTCTCCACCCTAGGGTTGCAAATGGTAAACGACTTCCCCTTTGGTTCCTCAGAAAACATCTTGACGGGTGACGGATGGAAAACGTATCTGGATCCGCAAGCACTGACCGATGCTTTACAACAATGGCAGTATGACGAGGACCCAAGAGTACTGGCTCGTGGTAACGACTTCTACACTAAGAACAATTTGCACTTAGATACGTTGTTTGATGCACGTGGGATCAAAGACACTGACTTCGTGGATGAATGGAAAGATTTCACACCAGTGGTTTACCACGGCGGAGTAATTGGTCCGGTTAACGTTAAGTCAGGTATCACTTATTTACCAACCTTGCCTTACATTCAAAACCACAGCGTGGTGGAAGGTGTGAGTCTGGGGGTAACTGACAGTGACATCACTGCTTACGGATGGGGTAGTAAAACGCTTAAACGCGAATCGACCAATGAGTACTTTTTGTTGGACGACTACCATCAGCATCAACCGCTCTCCTTTACGGCTCCGGGAACCGCGGGCAGTTTGGCTAAAGAGTTAGCTTGGTTAGAGATCAACAACGATCTACAAACAGGCTATGGTGCAACGTGTTACGCTTACGACCAAGGGATTGCTCTGGGATTACGTAAAGTCGTCTTCGGTAATAAACTGTCTTTCGACGACACCTTTACGTTCACGGTAAACGGTCGTGTGATGAATGACCAAATCGTCACGGTACCTTGGGATGAGTATTTCCCGGGTAAAGCCGTGACGGTCCTACACGAAGGTAAAGTCTACGGTGGTTTAGAACACGATGAAGATTTGAATCAGCTGACGATGTTCTTGTTGGTTCATCTCAACGTTGATGGTATCACTAATCTTTATGTGTTCCGTTGGGAAGGGAATTACAGTGCTAATGCATGCACGTTGACATTGCATCCATATAAAGACGATCTCTTGGATGTATTGCCAGACAACCATGCGTTCCATCCGGTCTACGGTCGTGGTGTAATCAAATCGACAGGCGGACACATCAGCGGTCGTCATTACGGTCATCGCACTTACTTCTTGGAACACTCGTACCCACACACCAGTTTCCGAGACTTATTGGATAGTCGAGAAGAGTTGCTCGCAGGCTCTATTTTGACGGAACAACGTCTGGTCACTAACCGACATTATTCTCCATTAGGAAACAGCTTGGGTCGAATGTTGTTGACCAATGATCACACGGTCATCAATGGGCAAGTTCACGCGGATGGGGATTGGTCTCACTATTTGTGTCATTACGACGGCAAAGTGGGTGTCGGTGGGAACAACTTCCGATTCAATCACCCTGTACTCATTTTCCCGATGGCAGAACGTACTATGTTGTCTCGTGAATACGTCAACACCATCCAGTCAAATGGTAAGGTGGGGTTAGCAGGCACGGTTTGGTCGAATGAGAACGACTACCAAGGAGTCCTAGACGCTCGTGGTAAAGTAGGTGGCGATATCTACGGGAAACCGGGTTACATCGTCCCTGAGGATTTAGAGACGTTTAAAGCGGAACATCAAGAGTGGTTAGACTTCCGTGGTGGTTTAGGTTACACCGCTTTGGTGGTTATGCAAGACGGTGAGCAATTACACGGTCTGGAAATCCGTGCTGATCATCTTCGTTATTTAGACGTTGCTTACTTGGACGTGAAATTAACGGTGAATGGGGAATACCACTTAACTCGTGTAGGTGACCGAAGTGTTCTTAATGAAAGTGAACCTGCTTTCAAACACGTGTCCAATAACCGACGTTGGTTAATGACAGACTTCTATGTCCATTTCCATAATGAAGAATGTCATGTGGTAATTCAAAACCCATTTAAACACGTACCGGGTATTTTTGAATTCCGTCTCAACAACGGTAACATTGGTTCGGTGATCAAATACGTTCCACAACCGGATAAAGCAGGGTTAATTGATTTTGCTCCGGTAGTGATGACGTTAAGCGGACCTTGTATCCCTAAACGTGTGGAACCGGGTAAGGGCGAGTACTCTAACTATTATGGGGTGAGTGTGGACCGTTACGCTGGTGAGTTTAACACCACGGGGTTGTTGGCAATTGAACCGGGTACACGAATGGAGGTCAATGGCGACCCATTTGACATTCCACCGGGCTTAGTGGCACGTTACACACCTAACACAAAACAATACATCTACCTCACCCTAACCAATGGTGTTGTGTCTGTGTTGGTGAGTGGAGTTCCTGTTGAACGTGGTCAGCTTTACGCCATAGTAGAAACCAACGGAACCGTTGATTTAAAAATCACATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
5cffa5e98d185254d70a09f677b68077f0bafc54f261d40670b70139fe86d732
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,3414
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete Genome Sequence of Vibrio Parahaemolyticus Bacteriophage pTD1 Midorikawa,Y. and Sano,M. 2017-07-13 — GenBank