Protein

View in Explore
Genbank accession
QCW19670.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,76
Protein sequence
MANQDTDLRCYLTNAGIAAENNSIQLGRKLPVKEMVFGSGLLADGSDPRLQTTMIQEEYAVPCGMLFDPESPTLLVFKSDLPADVGGFHIHEVAIRLEDGTLYGYARGKGDYKPTIEQGATDSVRYAVEMYTTNASNVECKVDLSKVYVDWEDLEVAMKKAEDDLSAHAGAPNPHPQYAMSANTQFLPYDPTRIYSVGEVCYTKAANGKVTYWEWYSNVESLAGKDPLNTANRRIGWANVTKPFYWKPYMPKVAGETMSWDTDTIPENMVVGIGQQLPKAVYHSLATAKPEWIDATDNSLINIPDRQGRFVRAADGTTWLVGQTHEDAIRNITGSVRSFYGSNVVSAGAMREEIYGNSPAKVGVIGGDPGANYTIGFDASRVVPTAAENQPKAFIEWVGYAL
Physico‐chemical
properties
protein length:402 AA
molecular weight: 44097,97890 Da
isoelectric point:4,90420
aromaticity:0,09950
hydropathy:-0,33806

Domains

Domains [InterPro]
DC_0787
STR
1–399
DC_0787
IPR022225
ATT
8–148
IPR022225 SSF88874
QCW19670.1
1 402
Architecture
ATT
STR
ATT 1-148 | STR 149-399 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QCW19670.1
1 402
Domain Start End Length (AA) Confidence
N-terminal 1 182 182 0,9964
Central domain 183 381 200 0,0154
C-terminal 382 402 20 0,8904
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-182
Central
183-381
C-terminal
382-402

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage Va_90-11-286_p16
[NCBI] 		2565519 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Vibrio anguillarum
[NCBI] 		55601 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QCW19670.1 [NCBI]
Genbank nucleotide accession
MK672802.1 [NCBI]
CDS location
range 12900 -> 14108
strand +
CDS
ATGGCTAATCAAGATACAGACTTGCGCTGCTATTTAACGAATGCAGGGATTGCAGCAGAAAACAACTCGATCCAACTAGGTCGAAAGCTACCCGTGAAAGAAATGGTGTTTGGTAGCGGGCTGCTTGCTGATGGAAGTGACCCTCGCTTGCAAACCACTATGATTCAAGAAGAGTACGCCGTTCCATGCGGTATGCTGTTTGACCCTGAAAGCCCAACACTATTAGTATTTAAGAGTGATTTACCTGCAGATGTAGGCGGCTTTCATATTCATGAGGTGGCGATCCGCTTAGAAGACGGCACACTTTACGGTTACGCTCGCGGAAAAGGGGATTACAAGCCAACCATAGAGCAAGGTGCTACCGATTCGGTTCGCTATGCCGTGGAAATGTACACAACCAACGCGAGCAATGTTGAGTGCAAAGTTGATCTATCAAAAGTGTATGTTGATTGGGAAGATCTGGAAGTGGCAATGAAAAAGGCTGAGGATGATTTATCTGCGCACGCAGGTGCTCCTAACCCACATCCACAGTACGCCATGTCTGCAAATACGCAATTCCTGCCTTACGATCCAACACGTATCTACTCAGTAGGCGAAGTCTGCTACACCAAAGCCGCAAACGGAAAAGTTACATATTGGGAATGGTACTCAAATGTAGAGTCGTTGGCGGGTAAAGATCCACTAAATACAGCTAACCGACGCATTGGTTGGGCGAATGTAACCAAGCCATTCTACTGGAAGCCCTACATGCCAAAAGTAGCCGGTGAAACTATGTCTTGGGATACTGACACAATTCCAGAAAATATGGTGGTAGGCATAGGTCAACAATTGCCTAAAGCCGTGTATCACTCGCTCGCAACCGCAAAGCCTGAATGGATTGATGCAACGGATAACTCCTTAATCAATATCCCGGATCGACAAGGGCGCTTTGTTCGTGCGGCTGACGGTACTACGTGGTTGGTGGGTCAAACTCACGAAGATGCGATTCGGAACATTACTGGTTCAGTTCGTTCATTTTACGGATCAAATGTTGTTAGTGCTGGGGCTATGAGGGAGGAAATTTACGGAAACAGTCCGGCTAAGGTGGGGGTAATAGGTGGCGATCCGGGTGCTAACTATACTATAGGTTTTGACGCATCAAGAGTTGTTCCTACTGCCGCCGAAAACCAGCCTAAAGCCTTTATTGAATGGGTAGGATACGCACTATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
44aaca3196c83552ec02a2284defe603385c903bbe4fac893905dd22bb3cb574
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8219
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Large phenotypic and genetic diversity of prophages induced from the fish pathogen Vibrio anguillarum Andersen,N., Castillo,D., Kalatzis,P. and Middelboe,M. — — GenBank