Phage RBP Database

Genbank accession

AKO61606.1 [GenBank]

Protein name

hypothetical protein

RBP type

TSP

Evidence DepoScope

Probability 1,00

TSP

Evidence RBPdetect2

Probability 0,79

Protein sequence

MAGFKQSLKEHRPVSLITFDGDQFDPVLRTSLANPPVILDESEYQNNAILMNEQPDFPGYRMGMSSLVGLEQTDQYAMAFGYNGYNALNPSGWTKTLLQVPHIAALGFPNNNGSFSLSFMYYRDQDENAGWRETRRSLGQSYTDTLQRPILRKAGVFDIWWEDYWSSQHVVALVGPDNKRINIRNDTLDGATQSGSASRFYKRNLLFTCVYDCQLTSPGVYTCNWIIYINGRERARTTWTALDTPPVVNAVSPIEIGGRINSAAVHNDRNTSFVMLDQIGVFNKAFTPDQVAWLWKKCLAYDDMIHASYPNNFWTMGDADSQTNFAMVDSSRSSDRRDGVYIGGNQLAIRGRAGPPRLGGSAVTFTNGGMAAVHYQPSGYSPVWNPDADYTIELWTTFSNATRGVIFSNQRDDRPFPGMLLECNRRNNQDYPGALQFSVDSSTFVQTKQYKADNSPYHFGDGQFHHVVMIRRGTTIELWVDSELHATANTAINRVSSPGPGQIYLMSTMPGALNVNGTMCYLITYPYALQSQEIKARYSYRYLYRIQGNVTLQGSPYQANVRVLNTMTGELITQTTSDQSTGNYSINLYDNTLLDLYALNIQDPNIRYRIYGPIRPAELEDLPQ

Physico‐chemical properties

protein length:	624 AA
molecular weight:	70283,76500 Da
isoelectric point:	5,84853
aromaticity:	0,11699
hydropathy:	-0,43974

Domain architecture

AKO61606.1

1 624 aa

STR 26–298 · STR 360–556 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

G3DSA:2.60.120.200
STR

G3DSA:2.60.120.200 IPR013320

G3DSA:2.60.120.200
STR

G3DSA:2.60.120.200 G3DSA:2.60.120.200

IPR013320
STR

IPR013320 PF13385

AKO61606.1

1624 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_1745
RBD

DC_1745

AKO61606.1

1624 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
G3DSA:2.60.120.200	STR	G3DSA:2.60.120.200	26	296	Merged direct domain	G3DSA:2.60.120.200	Central	Low	Positional only	153 proteins / 153 hits
G3DSA:2.60.120.200	STR	G3DSA:2.60.120.200	26	295	Merged direct domain	G3DSA:2.60.120.200	Central	Low	Positional only	153 proteins / 153 hits
IPR013320	STR	IPR013320	38	298	Merged direct domain	Concanavalin A-like lectin/glucanase domain superfamily	Central	Low	Positional only	237 proteins / 237 hits
IPR013320	STR	IPR013320	360	542	Merged direct domain	Concanavalin A-like lectin/glucanase domain superfamily	Central	Low	Positional only	237 proteins / 237 hits
G3DSA:2.60.120.200	STR	G3DSA:2.60.120.200	363	556	Merged direct domain	G3DSA:2.60.120.200	Central	Low	Positional only	153 proteins / 153 hits
PF13385	LEC	DC_0004	384	535	InterPro cluster	PF13385	C-terminal	Medium	Text match	334 proteins / 417 hits

Proteins with similar domain architecture

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout

AKO61606.1

1 624 aa

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	10	10	0,8295
Central domain	11	209	200	0,5036
C-terminal	210	624	414	0,5161

Note: Constraints were applied during segmentation.
Fixed 6 C-terminal predictions appearing before Central domain

N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Phage

Stenotrophomonas phage IME-SM1 [NCBI] · taxon 1654717

Uroviricota Caudoviricetes Menderavirus

Host

Stenotrophomonas sp. [NCBI] · taxon 69392

cellular organisms Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales

Genbank protein accession

AKO61606.1 [NCBI]

Genbank nucleotide accession

KR560069 [NCBI]

CDS location

range 41357 -> 43231
strand +

CDS

ATGGCAGGTTTCAAACAATCCTTGAAAGAACATCGTCCAGTTTCGCTGATCACGTTTGACGGTGACCAGTTCGATCCTGTGCTGCGTACTTCGCTTGCCAATCCCCCGGTGATCCTGGATGAGTCGGAGTATCAGAACAACGCTATCCTCATGAACGAGCAGCCAGACTTCCCGGGCTATCGCATGGGTATGAGCTCGCTTGTCGGGCTAGAGCAGACTGACCAATACGCTATGGCGTTCGGCTATAACGGCTACAATGCCTTGAACCCGAGCGGCTGGACCAAGACTCTGCTGCAGGTTCCACATATCGCAGCACTCGGCTTCCCAAACAACAATGGCTCGTTCAGTCTGTCGTTCATGTACTATCGCGATCAAGACGAGAACGCTGGCTGGCGTGAGACTCGACGCTCCTTGGGGCAATCTTACACCGATACGCTTCAGCGTCCGATCCTCCGTAAGGCGGGTGTATTTGACATTTGGTGGGAGGATTACTGGTCATCTCAGCACGTTGTGGCTTTGGTTGGCCCAGACAACAAGCGCATCAACATCCGCAATGACACCTTGGACGGTGCAACTCAATCAGGATCGGCTAGCCGATTCTACAAGCGCAACCTGCTGTTCACATGCGTCTATGACTGTCAGCTGACCAGCCCAGGTGTCTACACTTGCAACTGGATCATCTACATCAACGGCAGAGAGCGCGCTCGTACCACATGGACAGCGCTTGACACTCCGCCTGTGGTGAATGCCGTTTCACCTATCGAAATTGGTGGGCGCATCAACTCAGCCGCTGTCCACAATGACCGCAACACCTCGTTCGTTATGCTCGATCAGATTGGCGTGTTCAACAAAGCATTCACCCCGGATCAGGTGGCGTGGCTGTGGAAGAAGTGCTTGGCTTACGACGATATGATCCATGCGTCCTATCCCAACAACTTCTGGACGATGGGTGACGCAGATAGCCAAACCAACTTTGCTATGGTTGACAGTTCGCGTTCTAGCGATAGACGAGATGGTGTATACATTGGTGGCAACCAGTTGGCAATCCGTGGTCGGGCTGGTCCTCCACGTCTTGGTGGTTCGGCTGTCACGTTCACCAATGGTGGCATGGCGGCTGTCCACTATCAACCCAGCGGTTACTCACCAGTCTGGAATCCAGACGCCGACTATACCATTGAGCTATGGACGACATTCTCCAACGCAACCCGTGGCGTGATCTTCTCGAATCAGCGAGATGACCGTCCTTTCCCAGGTATGCTGCTGGAATGCAATCGTCGCAATAATCAAGACTATCCGGGAGCATTGCAGTTCTCGGTGGACAGCTCGACGTTTGTCCAGACTAAGCAATACAAGGCGGACAACTCACCTTACCACTTCGGTGACGGTCAGTTCCATCATGTGGTCATGATCCGTCGAGGCACGACCATTGAGCTATGGGTTGACAGTGAGCTGCACGCCACAGCCAACACAGCCATCAATCGTGTAAGCTCTCCGGGTCCGGGTCAGATCTATCTGATGAGCACGATGCCCGGCGCGCTGAACGTGAACGGCACTATGTGCTACCTCATCACCTATCCATATGCTTTGCAGAGTCAAGAGATCAAGGCGCGGTACAGTTACCGCTACTTGTATCGCATTCAGGGCAATGTGACGCTGCAGGGTTCACCATATCAAGCGAACGTTCGTGTCTTGAACACGATGACAGGTGAACTGATCACCCAGACCACGAGCGATCAGTCAACAGGCAACTATTCAATCAACTTGTATGACAACACCTTGCTCGACCTGTATGCTCTAAATATCCAGGACCCGAACATTCGCTATCGTATCTATGGGCCTATCCGCCCTGCAGAACTTGAGGATCTACCGCAATGA

Protein

Domains

Tail Spike Domain Segmentation

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)