Phage RBP Database

Genbank accession

YP_007011007.1 [GenBank]

Protein name

central tail fiber J

RBP type

TF

Evidence GenBank

Probability 1,00

TF

Evidence Phold

Probability 1,00

TSP

Evidence RBPdetect

Probability 0,84

TF

Evidence RBPdetect2

Probability 0,99

Protein sequence

MSSGGGKASTPKLLDDNLKSKQFYRVLDLISEGPIAGPVDQEHMSSFMLNKTPITDASGNVNVNGISVAWRPGSETQQPINGFSAIEATTIVNTDVTHDTPLVRTITDQDVTRVRFNVGVTGLVEQDTKGNQNNTSVTMVLESRTGASGWVIEKTVTITGKISGQYLEAHLIDAPDIKPFDIRVRRITPDSSSDLLSNGTIWNSYSEITDDNLSYPFSAIAGAVIDRDQYTDTPSRTYHLRGLIVDVPDNYDPIARTYSGLWTGGFKKAWTNNPAWLFRELAKNTRFGLAKRAGYIDVDDGALYVLSQYCDQLVNDGYGGQEPRMTLNAYITEQASARDILDKIASMFRGIALWDGMRLSVMLDAPQDPIATITNSNVVDGEFKRSSVKRSEKYNAVVVSWTDPDNGWEQVKEYVSDDEMIARGNYNETTLEAFGCTSRGQAWRAGKWLLETAKRESSRLSFQMARDAIHFTPGDIVEIMDNNYAGARLGGRIMSHSGNKITVDAVESSLIAGGDTMSIMGSSGKFVKYVIDGVANNVVTLKTTPSWVRDGTVFAISTSNVSTRLFRILSVAETENNSVYSITASQHDPNKQAIVDEGAVFEIPNDTLNGYRVPNVENLRIINTNSETVQVMATWETATTTKKLVFELYVYSGDGKVVSQYETDQFRYEFYGLAAGSYTLGVRGRNENGMKGVETQISMIIGAPPAPSSIIWTPGLFSADLVPVMRITATTDTSFEFWYSGQNKITDPANIEDLAQFLGRSNQWTLHGLQADKTYYVYVRTRNAFGVSEFVEASGQASSDIPGMIDLIDEQIRESDAFKNVQEGVDINLEGVMSNALANHGKVEHQYQQYGEVRADILVVKTTVATAEQGLADLSTYVQAQIGPEGELTSAVNQKMTAEVNSDGTAKASYTLNMGIVRNGVKYNTGFGMSIEPSGNSYKSTVVFAAEQFGIYSGNNPGNWQAAFFVYNGQVFIRSALIQEASIDFAKITDSLQSANFIPGGGGRGWNLPKSGSPEFHGKLYADSGEFAFNGVNNVTRIDGNGITVNLSGGGRVVVGRWT

Physico‐chemical properties

protein length:	1059 AA
molecular weight:	115696,66990 Da
isoelectric point:	4,96394
aromaticity:	0,09160
hydropathy:	-0,29292

Domain architecture

YP_007011007.1

1 1059 aa

ATT 87–211 · ATT 332–494 · STR 606–705 · ATT 706–809 · RBD 891–1020 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR053171
Unmapped

IPR053171 IPR015406

IPR055385
ATT

IPR055385 IPR032876 IPR055383 IPR057587

IPR003961
STR

IPR003961 IPR003961

IPR036116
STR

IPR036116

IPR003961
STR

IPR003961

YP_007011007.1

11059 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_0014
STR

DC_0014

YP_007011007.1

11059 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR053171	Unmapped	-	1	880	InterPro	Viral Tip Attachment Protein	-	-	-	-
IPR055385	ATT	DC_0360	87	211	InterPro cluster	Tip attachment protein J, HDII-ins2 domain	N-terminal	High	Text match	1136 proteins / 1139 hits
IPR032876	ATT	DC_0307	332	494	InterPro cluster	Tip attachment protein J	Central	Medium	Text match	1111 proteins / 1112 hits
IPR055383	STR	DC_0003	606	704	InterPro cluster	Tip attachment protein J, Fn3-1 domain	Central	High	Text match	998 proteins / 1603 hits
IPR003961	STR	DC_0003	613	691	InterPro cluster	Fibronectin type III	Central	High	Text match	998 proteins / 1603 hits
IPR036116	STR	IPR036116	617	792	Merged direct domain	Fibronectin type III superfamily	Central	Low	Positional only	52 proteins / 52 hits
IPR057587	ATT	DC_0130	706	809	InterPro cluster	Tip attachment protein J, second Ig-like domain	Central	Medium	Text match	309 proteins / 309 hits
IPR003961	STR	DC_0003	719	788	InterPro cluster	Fibronectin type III	Central	High	Text match	998 proteins / 1603 hits
IPR003961	STR	DC_0003	726	794	InterPro cluster	Fibronectin type III	Central	High	Text match	998 proteins / 1603 hits
IPR015406	RBD	DC_0135	891	1020	InterPro cluster	Tip attachment protein J, central straight fiber domain	C-terminal	High	Text match	1265 proteins / 1266 hits

Proteins with similar domain architecture

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout

YP_007011007.1

1 1059 aa

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	492	492	0,7941
Central domain	493	987	496	0,1097
C-terminal	988	1059	71	0,6100

Note: Constraints were applied during segmentation.
Fixed 72 C-terminal predictions appearing before Central domain|Sequence started with non-N-terminal domain

N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Phage

Salmonella phage SPN3UB [NCBI] · taxon 1147140

Viruses Duplodnaviria Heunggongvirae Uroviricota Caudoviricetes

Host

Salmonella typhimurium [NCBI] · taxon 90371

cellular organisms Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales

Genbank protein accession

YP_007011007.1 [NCBI]

Genbank nucleotide accession

NC_019545.1 [NCBI]

CDS location

range 21678 -> 24857
strand +

CDS

ATGTCTTCAGGTGGTGGTAAAGCATCAACCCCAAAACTCCTCGACGATAACCTCAAATCAAAACAGTTTTACCGGGTTCTCGATCTGATATCGGAAGGTCCGATTGCAGGGCCTGTCGATCAGGAACACATGTCATCGTTTATGCTTAACAAGACACCAATCACGGATGCAAGCGGAAACGTTAATGTGAATGGAATTAGCGTAGCGTGGCGCCCCGGATCGGAAACTCAGCAGCCAATTAATGGCTTTTCTGCTATTGAAGCAACCACCATCGTAAACACAGATGTAACCCATGACACCCCTCTTGTTCGTACCATAACCGACCAGGACGTAACCCGGGTGCGGTTCAACGTAGGCGTTACCGGTCTGGTTGAGCAGGACACTAAAGGAAACCAGAACAACACTTCCGTCACCATGGTGCTTGAGAGTAGAACAGGTGCTTCAGGATGGGTCATTGAAAAGACAGTTACTATCACCGGTAAAATATCAGGCCAATATCTCGAGGCTCATCTGATCGACGCTCCAGATATTAAGCCGTTTGATATTCGTGTACGCCGCATTACGCCTGACAGCAGCAGCGATTTACTGTCCAACGGCACTATCTGGAATAGCTACAGTGAAATCACCGACGACAATCTGAGCTACCCATTTTCAGCCATCGCTGGCGCTGTTATCGACCGCGACCAGTACACTGACACTCCAAGCCGCACCTACCATCTTCGCGGACTGATTGTGGACGTTCCTGACAACTATGATCCGATTGCCAGAACTTACTCGGGGTTGTGGACTGGCGGATTCAAAAAAGCGTGGACTAACAACCCGGCGTGGCTGTTCCGTGAACTGGCCAAGAATACGCGTTTTGGCCTGGCGAAACGTGCCGGTTATATCGATGTAGATGACGGTGCGTTGTACGTCCTCTCACAATATTGCGATCAGCTTGTGAACGATGGCTATGGCGGGCAGGAACCAAGGATGACGCTGAATGCCTATATTACCGAGCAGGCGAGTGCGCGTGACATTCTCGACAAGATAGCGAGCATGTTTCGGGGTATAGCGCTGTGGGACGGGATGCGACTGTCTGTCATGCTGGACGCGCCACAGGATCCGATAGCGACAATCACGAATTCTAACGTGGTTGATGGCGAGTTCAAGCGTAGCTCCGTGAAGCGTTCAGAGAAATACAATGCCGTTGTTGTGTCCTGGACTGACCCTGATAACGGCTGGGAGCAGGTAAAAGAGTATGTTTCCGACGATGAGATGATTGCCCGCGGAAACTACAACGAAACCACTCTTGAGGCGTTTGGCTGTACCTCACGCGGTCAGGCATGGCGAGCAGGGAAATGGCTGCTGGAAACAGCAAAGCGTGAAAGCAGCAGACTGTCTTTCCAGATGGCGCGCGATGCTATCCACTTCACACCGGGTGACATAGTTGAAATCATGGACAACAACTATGCTGGCGCGCGGCTCGGCGGCAGAATTATGTCACATTCAGGCAATAAAATTACCGTTGATGCTGTCGAATCATCGCTTATAGCTGGCGGCGATACCATGTCTATCATGGGGAGCAGCGGTAAGTTCGTGAAGTACGTCATTGATGGCGTTGCTAACAACGTTGTAACCCTGAAGACGACTCCATCATGGGTGCGGGATGGAACAGTGTTTGCTATCTCTACCAGCAACGTTTCAACTCGGTTATTTCGTATCCTCAGCGTCGCAGAGACAGAAAACAATTCCGTATACAGTATTACTGCATCACAGCATGATCCGAATAAACAGGCCATTGTGGATGAAGGCGCAGTGTTCGAAATTCCTAACGACACGCTTAATGGCTACCGCGTTCCGAACGTTGAAAACCTGCGGATTATTAACACCAATTCGGAAACGGTACAGGTTATGGCGACATGGGAAACAGCTACGACGACCAAAAAGCTTGTTTTCGAACTTTATGTCTACTCGGGTGATGGGAAAGTGGTTTCTCAGTACGAAACAGACCAGTTCCGGTATGAGTTTTATGGGCTGGCCGCCGGTAGCTACACGCTGGGTGTTCGTGGCCGCAATGAAAACGGGATGAAAGGTGTTGAAACGCAGATCAGTATGATTATCGGTGCGCCACCTGCACCATCCAGCATTATCTGGACGCCCGGCCTGTTTTCTGCTGACCTGGTGCCAGTCATGCGTATCACCGCCACCACAGATACTTCTTTCGAATTCTGGTACTCAGGGCAAAACAAGATTACCGATCCGGCTAATATCGAAGACCTGGCGCAGTTTTTGGGGCGCTCAAACCAGTGGACACTCCACGGCCTGCAGGCAGATAAGACATATTACGTTTATGTGCGCACCAGGAATGCTTTTGGTGTGTCTGAGTTTGTTGAGGCGTCAGGTCAGGCGTCATCCGATATTCCAGGTATGATAGATCTCATTGATGAGCAGATACGCGAGTCAGACGCGTTCAAAAATGTTCAGGAAGGTGTCGACATTAACCTGGAAGGCGTCATGTCGAACGCACTGGCTAATCACGGTAAGGTTGAACATCAGTACCAGCAGTATGGGGAGGTTCGCGCCGACATCCTTGTTGTGAAAACAACTGTCGCTACTGCCGAGCAGGGGCTCGCCGATCTTTCCACTTACGTACAGGCACAAATAGGCCCTGAAGGAGAGTTAACCTCAGCCGTAAATCAGAAAATGACCGCTGAGGTAAATAGTGATGGGACTGCAAAAGCCTCTTACACACTCAATATGGGGATTGTCAGGAACGGTGTGAAATATAACACCGGATTCGGCATGTCTATCGAGCCATCGGGGAATAGCTATAAATCTACCGTTGTATTTGCCGCGGAACAGTTCGGCATTTATTCCGGTAATAACCCCGGCAACTGGCAGGCTGCATTCTTCGTCTATAACGGACAGGTATTTATTCGTAGCGCATTAATTCAGGAAGCATCCATCGATTTTGCGAAAATTACCGATTCACTTCAGTCTGCAAACTTTATCCCCGGTGGTGGTGGACGCGGATGGAATTTACCAAAATCTGGTAGCCCAGAATTCCATGGGAAACTCTATGCCGACAGCGGTGAATTTGCATTTAACGGAGTGAATAACGTTACTCGCATTGACGGCAATGGGATCACAGTAAATCTCTCAGGAGGTGGTCGTGTTGTTGTTGGACGATGGACATAA

Protein

Domains

Tail Spike Domain Segmentation

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)