Protein

View in Explore
Genbank accession
AGH56784.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,89
Protein sequence
MYSTPTQNTAYIGIATNKDTEVPSIDKADYSWSRFKGEDGSSNINLGFIFTSNIVLDSSQNKVTRLSGSGWDAQVYSSLSYLGGCSVQSSPTTKMSSFMFGLSDNPTSSISFDHIDYAILLRSNGSKAIYESGSAVGEFGTYEIGDKFNIEYDNQTIKYYQNGNLLRTLSTTENRTFHFGSSFGTSAQNITEYITFIPIGAKGSDGTNGTNGTNGAKGDKGDIGPTGPSGISGPSIVYRGLFANGTTYYNNTQRRDVVKYGSVFYIYKGTNGANNTSWSSSNWENFGVQFESVATNLLLAESANIADWIISNGKITSQNQSTGRANAVLNGVDGRITFNGRTYVLASSGSGGTTVDSFTVIDNEGLLIERASGSSQQASNVQIKPDQININAAAPLDASSYGSPRVAIYSSVNVNSNNIGTGINFVAAVLGKVNNTSSSPAPSYGGYFEGLYAEGVHVRSRSITSTTYLDDMDYYVDCVNSSDITVYLPSSPNNGRIVRICRGRDDVLVNGNGKTIKFRNDNLSTINVSYDGNTAELIYVQSGNYWRYSELSRKF
Physico‐chemical
properties
protein length:555 AA
molecular weight: 59741,66640 Da
isoelectric point:5,32066
aromaticity:0,10811
hydropathy:-0,37586

Domains

Domains [InterPro]
DC_2058
STR
10–526
DC_2058
AGH56784.1
1 555
Architecture
STR
STR 10-526 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AGH56784.1
1 555
Domain Start End Length (AA) Confidence
N-terminal 1 47 47 0,9854
Central domain 48 462 416 0,4985
C-terminal 463 555 92 0,8144
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-47
Central
48-462
C-terminal
463-555

Taxonomy

  Name Taxonomy ID Lineage
Phage Cellulophaga phage phiST
[NCBI] 		756282 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Cellulophaga baltica
[NCBI] 		76594 cellular organisms > Bacteria > Pseudomonadati > FCB group > Bacteroidota/Chlorobiota group > Bacteroidota
Host Cellulophaga sp. MM#3
[NCBI] 		192170 Bacteria > Bacteroidetes > Flavobacteriia > Flavobacteriales > Flavobacteriaceae > Cellulophaga

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AGH56784.1 [NCBI]
Genbank nucleotide accession
HQ634192 [NCBI]
CDS location
range 67400 -> 69067
strand -
CDS
TTGTATTCAACGCCTACTCAAAATACAGCATATATTGGAATAGCTACAAATAAAGATACTGAAGTTCCAAGTATAGACAAAGCAGATTATTCTTGGAGTAGATTTAAAGGTGAAGATGGAAGCTCAAATATAAATTTAGGATTTATTTTCACTAGTAATATTGTACTAGATTCGAGCCAAAACAAGGTAACTAGATTATCTGGTTCAGGATGGGATGCTCAAGTTTACTCATCATTAAGTTATTTGGGTGGATGTAGTGTTCAATCTTCACCAACAACCAAAATGTCATCTTTTATGTTTGGACTTAGTGATAATCCAACGAGCTCAATATCTTTTGATCATATTGATTATGCTATTTTGTTGAGAAGTAATGGTTCGAAAGCTATATACGAAAGTGGTTCAGCGGTTGGTGAATTTGGAACTTATGAAATTGGTGATAAATTCAATATAGAGTACGATAATCAAACTATAAAATACTATCAAAATGGTAATTTATTAAGAACATTATCTACAACAGAAAATAGAACATTTCATTTCGGAAGTTCATTCGGAACAAGTGCACAAAACATTACTGAATACATAACATTTATTCCAATTGGAGCAAAAGGTTCTGATGGAACTAATGGAACGAATGGAACGAATGGAGCAAAAGGCGATAAAGGTGATATTGGACCAACTGGACCAAGTGGTATTTCTGGACCTTCTATAGTTTATAGAGGTTTGTTTGCAAATGGAACAACTTATTATAATAATACACAACGAAGAGATGTTGTAAAATATGGAAGCGTATTTTATATTTATAAAGGAACTAATGGTGCAAATAATACATCTTGGTCAAGCTCTAATTGGGAAAATTTTGGAGTTCAATTTGAATCAGTTGCGACAAATCTATTATTAGCAGAAAGTGCAAATATAGCAGATTGGATTATTTCAAATGGCAAAATAACTAGTCAAAATCAATCAACTGGTAGAGCGAATGCTGTATTAAATGGAGTTGATGGAAGAATTACTTTCAATGGAAGAACTTATGTTTTAGCTTCAAGTGGTTCAGGTGGCACAACTGTAGATAGTTTTACAGTAATAGATAATGAAGGGTTACTCATAGAGAGAGCATCAGGATCTAGTCAACAAGCATCGAACGTTCAAATAAAACCAGATCAAATTAATATAAATGCAGCCGCTCCATTAGATGCATCTTCATATGGATCACCAAGAGTTGCTATTTATTCGAGCGTAAACGTTAATTCAAATAATATCGGAACAGGTATTAATTTCGTTGCAGCCGTTTTAGGTAAAGTTAACAATACATCTTCTAGCCCAGCACCTTCTTATGGAGGTTATTTTGAAGGCTTATATGCTGAAGGTGTGCATGTTAGATCAAGATCTATAACGTCAACAACTTATTTAGATGATATGGATTATTATGTTGATTGTGTCAATTCATCAGATATTACAGTATACTTACCTTCTAGTCCTAATAATGGACGAATAGTTCGTATATGTAGAGGTCGCGATGATGTTTTAGTAAATGGTAACGGAAAGACTATAAAATTTAGAAATGATAATTTAAGTACTATAAATGTCTCTTATGATGGTAATACAGCAGAATTGATATATGTTCAATCTGGAAATTACTGGAGATATTCTGAATTATCTAGAAAATTTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
431938126b2ef372241f54a237169dd70cc717358e8e77a200c59e010240f82d
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7267
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Cellulophaga phage phiST Henn,M.R., Reimann,L., Holmfelt,K., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E.R., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Haas,B., Nusbaum,C. and Birren,B. 2011-09-23 — GenBank