Protein

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Genbank accession
YP_009214148.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,88
TF
Evidence RBPdetect2
Probability 0,95
Protein sequence
MINLRDRIYTVDINTKSYQVAKYKQYDNAIEFKINLLENNIEKDLTGYTAIANFQRPDGKIVYQSCTIENSIATTIIENNITEVAGDVIVEFTFYKDDLVVTTFSLKINIEKSIDKNSITEEPKWDYISVTINQVKEVVEGIEEIKETEEARKEAEIKRVEEFNSIKETFDSKVTEVTDAKNSMISDVNTTKDTLTTLIDEVNTVKAEVTTAKNTMISEVTTAKETMQTEVTDAINAIPTKEELKGVGIEIKGSLDNISALPVNPTLSDAYFVKSATIENQIDLYVWDNTNWVKVPDIKIKGENGDGLEFNWDGTRLGIRIEGQENYTYTDLKGQKGDKGDSIEFNWNGTRLGIKIEGQENYSYTELKGEQGYTPTIGENGNWWINNIDTQKPARGASLRILGKLDSIDNLPLDPTIGDCWIIGRNIYIYQTKWEDLGSLAGVDGKNLEFNWDGTQLGVRQQYELDYKYIDLKGDNIEFAWDGTRLGVRIEGQENYTYTDLKGQKGDSIEFSWDGTELGVRIEGQEDYSYTNLKGATGNKLEFNWNGSQLGIREEGQTEYIYTELRGEQGYTPAIGENGNWFINGEDTGKASKGKVTWNELLEKPKELDYIKKSTTFNSDGSITDILDSVSKTITKFNADGTIVDEKYIDNVLVSKVKTTFKGNQIEEIKEEVS
Physico‐chemical
properties
protein length:674 AA
molecular weight: 76110,62740 Da
isoelectric point:4,53674
aromaticity:0,09199
hydropathy:-0,61350

Domains

Domains [InterPro]
IPR018913
ATT
19–136
IPR018913 DC_0947 DC_1486
Coil
Unmapped
132–158
Coil
YP_009214148.1
1 674
Architecture
ATT
STR
ATT
ATT 19-136 | STR 205-397 | ATT 522-664 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Clostridium phage phiCD146
[NCBI] 		1582151 Uroviricota > Caudoviricetes > Leicestervirus >
Host Clostridioides difficile
[NCBI] 		1496 cellular organisms > Bacteria > Bacillati > Bacillota > Clostridia > Peptostreptococcales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009214148.1 [NCBI]
Genbank nucleotide accession
NC_028958.1 [NCBI]
CDS location
range 19338 -> 21362
strand +
CDS
GTGATAAATTTGAGAGATAGAATTTATACAGTAGATATTAACACTAAAAGTTACCAAGTTGCAAAATATAAGCAATATGATAATGCAATAGAATTTAAGATTAATTTATTAGAAAATAATATAGAAAAAGATTTGACAGGATATACAGCTATAGCAAATTTTCAAAGACCAGACGGGAAAATAGTTTATCAGAGCTGTACTATAGAAAATTCTATTGCAACAACTATAATAGAAAATAACATAACAGAAGTTGCGGGGGATGTAATAGTAGAGTTTACTTTCTACAAAGATGATTTAGTTGTTACTACTTTTTCTTTAAAGATTAATATAGAGAAAAGTATAGATAAAAACAGTATTACAGAAGAACCGAAATGGGATTATATCAGCGTTACAATAAATCAAGTAAAAGAAGTCGTCGAAGGCATAGAAGAAATAAAAGAAACAGAAGAAGCAAGAAAAGAAGCAGAAATTAAAAGAGTCGAAGAATTTAATAGTATAAAAGAAACTTTCGACTCTAAAGTTACAGAAGTTACAGACGCTAAAAACAGCATGATTAGTGATGTTAATACTACTAAAGATACTCTAACAACATTAATAGACGAAGTTAACACAGTTAAAGCGGAAGTTACAACAGCTAAAAATACTATGATTAGCGAAGTAACTACAGCTAAAGAAACTATGCAGACAGAAGTTACAGACGCTATTAATGCAATCCCCACAAAAGAAGAGTTAAAAGGGGTAGGAATAGAAATAAAAGGAAGTTTAGATAATATATCAGCACTTCCAGTCAATCCAACTTTAAGTGATGCTTACTTTGTAAAAAGCGCAACAATAGAAAACCAAATTGATTTATATGTTTGGGACAACACTAATTGGGTCAAAGTTCCTGACATAAAAATAAAGGGTGAAAATGGAGATGGCTTAGAATTTAATTGGGATGGCACGCGACTAGGTATAAGGATAGAAGGACAGGAGAATTATACTTATACAGATTTAAAAGGTCAAAAAGGCGATAAAGGTGATAGTATTGAATTTAATTGGAATGGCACACGATTAGGTATAAAGATAGAAGGTCAAGAAAATTATAGTTATACAGAATTGAAAGGGGAGCAGGGTTATACTCCAACAATAGGAGAAAATGGAAACTGGTGGATTAATAATATAGATACCCAAAAACCAGCTAGAGGGGCATCTTTGAGGATTTTAGGAAAATTAGATTCTATAGATAACTTACCATTAGACCCTACTATCGGAGATTGCTGGATTATAGGGAGAAATATTTATATATATCAAACTAAATGGGAAGACTTAGGTTCTCTAGCGGGCGTGGACGGCAAGAACCTAGAATTTAATTGGGATGGCACACAGTTAGGCGTTAGGCAACAATACGAATTAGATTATAAGTATATAGACCTCAAAGGTGACAATATCGAATTTGCATGGGATGGCACACGACTAGGTGTAAGGATAGAAGGACAGGAGAATTATACTTATACAGATTTGAAAGGTCAAAAAGGCGATAGCATTGAATTTAGTTGGGATGGTACGGAGCTAGGCGTTAGAATAGAAGGTCAAGAGGACTATAGCTATACAAATCTAAAAGGAGCGACAGGAAATAAATTAGAATTTAATTGGAATGGAAGTCAGCTAGGTATTAGAGAAGAAGGACAAACGGAATATATATATACAGAGCTTAGAGGGGAACAAGGTTATACTCCAGCAATCGGCGAAAACGGTAATTGGTTTATAAATGGAGAAGACACGGGGAAAGCGTCAAAAGGAAAAGTTACATGGAATGAGTTATTAGAAAAACCGAAAGAGTTAGATTACATTAAAAAAAGCACGACTTTTAATTCAGACGGCTCTATAACAGATATTTTAGACTCGGTTAGTAAAACTATAACTAAATTTAATGCAGATGGGACTATAGTAGACGAAAAATATATAGATAATGTATTAGTAAGTAAAGTAAAAACGACTTTTAAAGGTAATCAAATAGAAGAAATAAAAGAAGAGGTGAGTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
9d8c56c6c46479be70373fc1ae8fe3ea0a68e064e6252cba18d715eda22e6012
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7435
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Whole Genome Sequence and Molecular Characterization of Siphoviridae / Myoviridae Phage Infecting Clostridium difficile Monot,M. 2011-08-01 — GenBank