Phage RBP Database

Genbank accession

XRM24789.1 [GenBank]

Protein name

putative endopeptidase

RBP type

TSP

Evidence RBPdetect

Probability 0,88

Protein sequence

MILESLVLTNRKGTYGEIITDFDYGSLKYDFEVNGERSISFTAFQTNKNKDIFNSIVNEMLILWEGQTYSIKTTDVKYDGFIVSVDVTAQHIFMEFQNHYIQKDLESEEMNNDDTTDEDKKPTMTLSQYLDFGFSGNKLGFSYEIKGKFNKRVAVEDLGDKNGMEFISEGVDLYNYIYYADNKKIYFYDRDRFYELSDEPIIDRLNSDEVQSTINTTELKTYIQGYGKKKTKAETKNYNPIKPKNLSYSGTFIKNGTWRTESVGASYTKTFNCKWGNEKLEWTLKKMSKGGLVDVYLDGELMGRYECYSKTATSEKIIIAQRLQKGSHTFKAVFRGAKSGVDYKKSKPCMYVGTEKSTVLNLTAVLKGTDMYHAYAEYKSPNIDVFGLSEAPTIFEDNILDEEELKKALKEKLTDSPVIEVSTNYLGNYDIKDNNSMMFISESLGYNAELKVVKLTKYHPKLNLPVEVEFSNAKADFVDIQQKTVNNISKITKTLNSGNSLISMPENYSDIVGVTLTDG

Physico‐chemical properties

protein length:	519 AA
molecular weight:	59235,08200 Da
isoelectric point:	5,29992
aromaticity:	0,11753
hydropathy:	-0,55318

Domain architecture

XRM24789.1

1 519 aa

ATT 3–90 · STR 91–194 · ENZ 195–227 · STR 228–356 · ENZ 357–483 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

G3DSA:6.20.110.10
ATT

G3DSA:6.20.110.10 G3DSA:3.55.50.40 G3DSA:2.60.120.260

IPR044051
ENZ

IPR044051 G3DSA:3.55.50.40

IPR010572
ENZ

IPR010572

XRM24789.1

1519 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_1309
STR

DC_1309 DC_0937

XRM24789.1

1519 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
G3DSA:6.20.110.10	ATT	G3DSA:6.20.110.10	3	90	Merged direct domain	G3DSA:6.20.110.10	N-terminal	Low	Positional only	47 proteins / 47 hits
IPR044051	ENZ	DC_0346	6	91	InterPro cluster	Prophage endopeptidase tail, N-terminal	N-terminal	High	Text match	59 proteins / 59 hits
G3DSA:3.55.50.40	STR	G3DSA:3.55.50.40	91	194	Merged direct domain	G3DSA:3.55.50.40	Central	Low	Positional only	63 proteins / 63 hits
G3DSA:3.55.50.40	STR	G3DSA:3.55.50.40	91	190	Merged direct domain	G3DSA:3.55.50.40	Central	Low	Positional only	63 proteins / 63 hits
IPR010572	ENZ	DC_0675	113	483	InterPro cluster	Tail spike domain	Central	High	Text match	419 proteins / 419 hits
G3DSA:2.60.120.260	STR	G3DSA:2.60.120.260	228	356	Merged direct domain	G3DSA:2.60.120.260	Central	Low	Positional only	264 proteins / 264 hits

Proteins with similar domain architecture

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout

XRM24789.1

1 519 aa

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	104	104	0,8654
Central domain	105	312	209	0,5494
C-terminal	313	519	206	0,0997

Note: Constraints were applied during segmentation.
Fixed 5 C-terminal predictions appearing before Central domain

N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Phage

Staphylococcus phage RQ1 [NCBI] · taxon 3412444

Viruses

Host

Staphylococcus saprophyticus [NCBI] · taxon 29385

cellular organisms Bacteria Bacillati Bacillota Bacilli Bacillales

Genbank protein accession

XRM24789.1 [NCBI]

Genbank nucleotide accession

PV344601 [NCBI]

CDS location

range 51381 -> 52940
strand -

CDS

ATGATATTGGAAAGTTTAGTCTTAACAAACAGAAAAGGGACTTATGGTGAGATAATAACAGATTTTGACTATGGTTCTCTAAAGTATGATTTTGAAGTAAATGGAGAACGTTCAATATCATTTACTGCATTTCAAACAAATAAAAATAAAGATATTTTCAACTCTATTGTTAATGAAATGTTGATTTTATGGGAGGGACAAACCTATTCTATAAAGACAACAGATGTTAAGTATGATGGATTTATTGTTAGTGTAGATGTTACTGCTCAACATATCTTTATGGAGTTTCAAAACCATTATATTCAAAAAGATTTAGAAAGTGAAGAAATGAACAATGATGATACCACAGATGAAGATAAGAAGCCTACTATGACTTTATCACAATATCTTGACTTTGGTTTTAGTGGAAATAAGCTAGGATTTAGTTACGAGATAAAAGGTAAGTTTAATAAGCGTGTAGCAGTAGAAGATTTAGGTGATAAGAATGGGATGGAATTTATATCCGAAGGGGTAGACTTATATAACTATATATACTATGCTGATAATAAAAAAATATACTTCTATGACAGAGACAGATTTTATGAATTATCAGATGAGCCTATTATAGACAGGTTAAATAGTGATGAAGTACAATCAACTATAAATACGACTGAGCTCAAAACTTATATTCAAGGCTATGGTAAAAAGAAAACAAAAGCCGAGACTAAAAATTACAATCCAATCAAACCTAAAAACTTAAGCTACTCAGGAACTTTCATTAAAAATGGTACTTGGCGTACTGAAAGTGTTGGCGCTAGTTACACTAAAACATTTAATTGTAAATGGGGTAATGAAAAACTTGAATGGACATTAAAAAAAATGTCTAAGGGTGGATTAGTAGATGTTTATTTAGATGGTGAATTAATGGGACGATATGAGTGTTACAGTAAAACAGCTACAAGTGAAAAGATAATCATTGCTCAAAGATTACAGAAAGGTTCACATACTTTCAAAGCTGTATTTAGAGGAGCTAAATCAGGAGTAGATTATAAGAAATCTAAACCATGCATGTACGTTGGGACTGAGAAATCAACTGTATTGAACTTAACGGCAGTTCTTAAAGGTACTGATATGTATCACGCCTATGCCGAGTACAAGTCTCCGAATATAGATGTTTTTGGACTTTCTGAAGCCCCAACAATATTTGAGGATAATATTTTAGATGAAGAAGAATTAAAAAAGGCACTAAAAGAAAAATTAACAGACTCTCCAGTTATAGAAGTGTCTACTAATTATCTAGGAAACTACGATATTAAAGACAACAATTCTATGATGTTTATAAGTGAGTCATTGGGGTATAATGCTGAATTAAAGGTTGTTAAATTGACTAAATATCACCCAAAACTAAACTTGCCAGTGGAAGTAGAGTTTAGCAATGCTAAGGCGGATTTTGTAGACATACAACAAAAAACAGTTAACAATATATCTAAGATAACTAAAACATTAAATTCTGGAAATAGTTTAATAAGTATGCCAGAAAATTATTCAGATATTGTGGGGGTGACATTGACAGATGGCTGA

Protein

Domains

Tail Spike Domain Segmentation

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)