Protein

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Genbank accession

XRM24789.1 [GenBank]

Protein name

putative endopeptidase

RBP type

TSP

Evidence RBPdetect

Probability 0,88

Protein sequence

MILESLVLTNRKGTYGEIITDFDYGSLKYDFEVNGERSISFTAFQTNKNKDIFNSIVNEMLILWEGQTYSIKTTDVKYDGFIVSVDVTAQHIFMEFQNHYIQKDLESEEMNNDDTTDEDKKPTMTLSQYLDFGFSGNKLGFSYEIKGKFNKRVAVEDLGDKNGMEFISEGVDLYNYIYYADNKKIYFYDRDRFYELSDEPIIDRLNSDEVQSTINTTELKTYIQGYGKKKTKAETKNYNPIKPKNLSYSGTFIKNGTWRTESVGASYTKTFNCKWGNEKLEWTLKKMSKGGLVDVYLDGELMGRYECYSKTATSEKIIIAQRLQKGSHTFKAVFRGAKSGVDYKKSKPCMYVGTEKSTVLNLTAVLKGTDMYHAYAEYKSPNIDVFGLSEAPTIFEDNILDEEELKKALKEKLTDSPVIEVSTNYLGNYDIKDNNSMMFISESLGYNAELKVVKLTKYHPKLNLPVEVEFSNAKADFVDIQQKTVNNISKITKTLNSGNSLISMPENYSDIVGVTLTDG

Physico‐chemical properties

protein length:	519 AA
molecular weight:	59235,08200 Da
isoelectric point:	5,29992
aromaticity:	0,11753
hydropathy:	-0,55318

Domains

Domains [InterPro]

G3DSA:6.20.110.10
ATT
3–90

G3DSA:6.20.110.10 G3DSA:3.55.50.40 G3DSA:2.60.120.260 DC_0937

IPR044051
ENZ
6–91

IPR044051 G3DSA:3.55.50.40 DC_1309

IPR010572
ENZ
113–483

IPR010572

XRM24789.1

1 519

Architecture

ATT

STR

ENZ

RBD

ATT 3-90 | STR 91-375 | ENZ 376-479 | RBD 480-519

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Domains [InterPro]

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
G3DSA:6.20.110.10	ATT	G3DSA:6.20.110.10	3	90	Merged direct domain	G3DSA:6.20.110.10	N-terminal	Low	Positional only	47 proteins / 47 hits
IPR044051	ENZ	DC_0346	6	91	InterPro cluster	Prophage endopeptidase tail, N-terminal	N-terminal	High	Text match	59 proteins / 59 hits
G3DSA:3.55.50.40	STR	G3DSA:3.55.50.40	91	194	Merged direct domain	G3DSA:3.55.50.40	Central	Low	Positional only	63 proteins / 63 hits
G3DSA:3.55.50.40	STR	G3DSA:3.55.50.40	91	190	Merged direct domain	G3DSA:3.55.50.40	Central	Low	Positional only	63 proteins / 63 hits
IPR010572	ENZ	DC_0675	113	483	InterPro cluster	Tail spike domain	Central	High	Text match	419 proteins / 419 hits
DC_1309	STR	DC_1309	190	375	Novel HMM	DC_1309	Central	Low	Positional only	61 proteins / 61 hits
G3DSA:2.60.120.260	STR	G3DSA:2.60.120.260	228	356	Merged direct domain	G3DSA:2.60.120.260	Central	Low	Positional only	264 proteins / 264 hits
DC_0937	RBD	DC_0937	480	519	Novel HMM	DC_0937	C-terminal	Low	Positional only	11 proteins / 11 hits

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout

N-terminal

Central

C-terminal

XRM24789.1

1 519

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	104	104	0,8654
Central domain	105	312	209	0,5494
C-terminal	313	519	206	0,0997

Note: Constraints were applied during segmentation.
Fixed 5 C-terminal predictions appearing before Central domain

Legend: N-terminal Central domain C-terminal

3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring

N-terminal
1-104

Central
105-312

C-terminal
313-519

Taxonomy

	Name	Taxonomy ID	Lineage
Phage	Staphylococcus phage RQ1 [NCBI]	3412444	Viruses >
Host	Staphylococcus saprophyticus [NCBI]	29385	cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Bacillales

Coding sequence (CDS)

Genbank protein accession

XRM24789.1 [NCBI]

Genbank nucleotide accession

PV344601 [NCBI]

CDS location

range 51381 -> 52940
strand -

CDS

ATGATATTGGAAAGTTTAGTCTTAACAAACAGAAAAGGGACTTATGGTGAGATAATAACAGATTTTGACTATGGTTCTCTAAAGTATGATTTTGAAGTAAATGGAGAACGTTCAATATCATTTACTGCATTTCAAACAAATAAAAATAAAGATATTTTCAACTCTATTGTTAATGAAATGTTGATTTTATGGGAGGGACAAACCTATTCTATAAAGACAACAGATGTTAAGTATGATGGATTTATTGTTAGTGTAGATGTTACTGCTCAACATATCTTTATGGAGTTTCAAAACCATTATATTCAAAAAGATTTAGAAAGTGAAGAAATGAACAATGATGATACCACAGATGAAGATAAGAAGCCTACTATGACTTTATCACAATATCTTGACTTTGGTTTTAGTGGAAATAAGCTAGGATTTAGTTACGAGATAAAAGGTAAGTTTAATAAGCGTGTAGCAGTAGAAGATTTAGGTGATAAGAATGGGATGGAATTTATATCCGAAGGGGTAGACTTATATAACTATATATACTATGCTGATAATAAAAAAATATACTTCTATGACAGAGACAGATTTTATGAATTATCAGATGAGCCTATTATAGACAGGTTAAATAGTGATGAAGTACAATCAACTATAAATACGACTGAGCTCAAAACTTATATTCAAGGCTATGGTAAAAAGAAAACAAAAGCCGAGACTAAAAATTACAATCCAATCAAACCTAAAAACTTAAGCTACTCAGGAACTTTCATTAAAAATGGTACTTGGCGTACTGAAAGTGTTGGCGCTAGTTACACTAAAACATTTAATTGTAAATGGGGTAATGAAAAACTTGAATGGACATTAAAAAAAATGTCTAAGGGTGGATTAGTAGATGTTTATTTAGATGGTGAATTAATGGGACGATATGAGTGTTACAGTAAAACAGCTACAAGTGAAAAGATAATCATTGCTCAAAGATTACAGAAAGGTTCACATACTTTCAAAGCTGTATTTAGAGGAGCTAAATCAGGAGTAGATTATAAGAAATCTAAACCATGCATGTACGTTGGGACTGAGAAATCAACTGTATTGAACTTAACGGCAGTTCTTAAAGGTACTGATATGTATCACGCCTATGCCGAGTACAAGTCTCCGAATATAGATGTTTTTGGACTTTCTGAAGCCCCAACAATATTTGAGGATAATATTTTAGATGAAGAAGAATTAAAAAAGGCACTAAAAGAAAAATTAACAGACTCTCCAGTTATAGAAGTGTCTACTAATTATCTAGGAAACTACGATATTAAAGACAACAATTCTATGATGTTTATAAGTGAGTCATTGGGGTATAATGCTGAATTAAAGGTTGTTAAATTGACTAAATATCACCCAAAACTAAACTTGCCAGTGGAAGTAGAGTTTAGCAATGCTAAGGCGGATTTTGTAGACATACAACAAAAAACAGTTAACAATATATCTAAGATAACTAAAACATTAAATTCTGGAAATAGTTTAATAAGTATGCCAGAAAATTATTCAGATATTGTGGGGGTGACATTGACAGATGGCTGA

Genome Context

Tertiary structure

PDB ID

246f7ea4d487ca24dd856bac7e03de2adadf97fae2d48b040a482ede66644285

ESMFold

Source ESMFold

Method ESMFold

Resolution 0,9108

Oligomeric State monomer

Download PDB

Model Confidence

Very high
pLDDT > 90

High
90 > pLDDT > 70

Low
70 > pLDDT > 50

Very low
pLDDT < 50

Protein

Domains

Domains [InterPro]

Domains [InterPro]

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

3D Structure with Domain Coloring

Domain Coloring

Taxonomy

Coding sequence (CDS)

Coding sequence (CDS)

Genome Context

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)

Model Confidence