Protein

View in Explore
Genbank accession
WPK33104.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,88
Protein sequence
MALILHYTRNEDGTFDRKRYNVPPMEYVVANIPDGVPVRIYRGEIGDDTDVTENFEALKEDDVFHIIEGAGGGGGFLGKLLDPLGVLKFVTKLISPSQKTPKTSLANQQAESPNNSLTDRNNKPRPYERSYDICGRVQTIPNDLMTTYKVFNDAGVVVEYGYYDAGRGYLDIKAEDITDGDTKVQEITGTSVAVYAPFTSPNNTNTPQLLVGDPINQNLYITIASNEVDGAVLKAQNDIRVNPSDTGEISLQGATGVVRDNTGDSAFSEILSVGDIAVFNLILVKDVANVSGSYTVTYVDDFEVRVAAGGMLSEWQKLPSGFTPLTQGTEAWISPSNTYDKSLTDWTTLNRLEVERVVANIAAANGMYKDNGSKLRTSVTVELQYQLLDETGVPYGDVYSKQAVISGRSADYTGVTIYADLPMRSKVRVRARRVTDLDLSFEGTVVDEVSYINLYGQVRDTTPHYGNRTTVHSARKQTPRAAEIKQPQLRMVATEMVYKYLGNGTFDTVMTPNTQAIQSLIRLARDPVVGNLNLTTSNMDKLLATQTEIENYFGSAEAGQFCYTFDDYKMTMQDIISTIADAIFCTPYRKGQDILLDFERPRIGPEMVFTHRSKTTATEKWTRTFNDAQVYDSLKFSYIDPDTNVKETISIPAEGGVNTETYDSKGIRNYRQAYWAAYRRYQKNLLKKVTVSFTATEEGVFVLPGRAISVVKGSRVAPQDGYVVAVNGLTLTLSQPVTFTPGDDHSLILKKRDGGVQSVAVVPGSHDREVIMLSAPQEAIYTGNSALKTEFSFGNEARHNAQMILVSTVDPGDDRTVKITGINYEADFYKYDGVAPFGSGFSGGFSNGFS
Physico‐chemical
properties
protein length:850 AA
molecular weight: 93617,70190 Da
isoelectric point:5,02772
aromaticity:0,09294
hydropathy:-0,33647

Domains

Domains [InterPro]
DC_0118
STR
1–683
DC_0118 DC_0808
NF040662
Unmapped
353–830
NF040662
WPK33104.1
1 850
Architecture
STR
RBD
STR 1-683 | RBD 702-843 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WPK33104.1
1 850
Domain Start End Length (AA) Confidence
N-terminal 1 232 232 0,9904
Central domain 233 431 200 0,5131
C-terminal 432 850 418 0,1199
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-232
Central
233-431
C-terminal
432-850

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage AV104
[NCBI] 		3077250 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WPK33104.1 [NCBI]
Genbank nucleotide accession
OR352935.1 [NCBI]
CDS location
range 19216 -> 21768
strand +
CDS
TTGGCGCTGATATTACATTACACCCGTAACGAAGACGGTACTTTTGACCGCAAACGGTATAACGTACCTCCGATGGAATACGTCGTTGCTAACATCCCAGACGGGGTACCTGTGCGTATTTACCGCGGCGAGATTGGTGATGATACAGACGTAACGGAAAACTTCGAAGCGCTGAAAGAAGATGACGTTTTCCATATCATAGAGGGCGCTGGCGGCGGTGGTGGTTTTCTTGGTAAACTCCTGGACCCTTTGGGTGTGCTTAAATTTGTTACCAAGTTGATTTCTCCGTCGCAGAAAACGCCTAAAACGAGTTTAGCGAACCAGCAGGCGGAGTCTCCCAACAACAGCCTGACTGACCGAAACAATAAACCGCGGCCGTATGAACGGTCGTATGATATTTGCGGCAGGGTCCAGACTATCCCTAATGACCTCATGACTACGTATAAGGTCTTCAATGACGCAGGTGTGGTAGTTGAATACGGCTACTATGACGCCGGTCGCGGGTATCTTGATATTAAAGCCGAAGACATCACAGACGGCGATACTAAAGTACAGGAGATTACCGGAACTTCTGTAGCGGTATACGCCCCTTTTACGTCCCCTAACAATACAAATACGCCTCAGCTTCTGGTAGGGGATCCTATTAATCAAAATCTATACATAACTATTGCCTCGAACGAGGTAGATGGGGCCGTTCTTAAAGCGCAGAACGACATCAGGGTTAATCCCAGTGATACCGGTGAGATTTCATTGCAGGGGGCAACTGGTGTCGTCCGCGATAACACTGGCGACTCTGCTTTCTCTGAGATTTTATCAGTTGGGGACATAGCTGTTTTTAACCTTATTCTGGTAAAAGACGTGGCTAACGTCAGTGGTAGCTATACTGTTACATACGTAGATGACTTTGAGGTAAGAGTAGCCGCCGGAGGGATGTTGTCAGAATGGCAAAAATTGCCATCGGGATTCACTCCTTTAACGCAAGGTACCGAAGCATGGATTTCACCGTCGAACACTTACGATAAGTCGTTAACGGACTGGACTACTTTAAACCGCCTGGAAGTTGAACGCGTAGTAGCCAACATTGCGGCTGCTAATGGTATGTATAAAGACAACGGCAGTAAATTGCGCACGTCGGTAACTGTGGAGCTTCAGTATCAACTCCTTGATGAAACTGGCGTGCCGTACGGTGATGTTTACTCAAAACAGGCCGTTATATCAGGTCGTTCTGCGGATTACACAGGTGTTACTATTTACGCCGACTTGCCCATGCGGTCGAAAGTTAGGGTACGTGCCCGCCGCGTCACTGACCTGGACCTCAGTTTTGAGGGAACCGTGGTAGACGAGGTTTCCTACATCAATCTTTATGGGCAGGTACGCGACACTACACCACATTACGGCAACCGTACTACCGTGCACTCCGCACGTAAGCAGACGCCGCGGGCAGCGGAGATTAAGCAACCACAGTTACGTATGGTCGCCACAGAGATGGTGTACAAATACCTCGGCAACGGCACATTCGACACGGTTATGACGCCGAATACTCAGGCGATTCAGTCCTTAATCCGTCTCGCCCGCGACCCGGTAGTAGGTAATCTCAACCTAACAACATCCAATATGGACAAGTTGTTAGCTACTCAAACTGAGATAGAAAACTATTTCGGTAGCGCAGAGGCAGGCCAATTCTGCTACACTTTTGACGATTATAAAATGACCATGCAGGATATCATCAGCACAATAGCTGATGCTATTTTCTGCACTCCATATCGTAAAGGGCAGGACATATTGCTGGACTTCGAGCGCCCGCGGATTGGCCCGGAAATGGTGTTCACACATCGCAGCAAGACTACAGCTACGGAGAAGTGGACCCGAACGTTCAACGACGCTCAGGTATACGATAGTCTTAAGTTCTCCTACATCGACCCCGATACCAACGTCAAAGAGACAATCAGCATCCCAGCCGAAGGTGGTGTCAATACTGAAACGTATGACTCCAAAGGTATACGTAATTATCGTCAGGCGTACTGGGCGGCGTACCGTCGGTACCAGAAGAACCTGTTGAAGAAAGTCACGGTGTCCTTTACGGCGACAGAAGAAGGAGTTTTTGTGCTGCCGGGTCGCGCAATAAGCGTCGTTAAGGGTTCACGCGTAGCGCCTCAAGACGGCTATGTTGTTGCCGTTAATGGTCTTACTCTGACGTTATCACAACCGGTTACTTTTACCCCCGGAGACGACCACTCATTGATTCTTAAGAAGCGTGACGGTGGTGTTCAGAGCGTTGCAGTGGTTCCTGGAAGTCATGACCGTGAAGTGATTATGTTATCCGCGCCGCAGGAGGCAATTTACACAGGGAATAGCGCACTAAAAACTGAGTTTTCATTCGGCAACGAAGCAAGGCATAATGCTCAGATGATTCTTGTTTCTACAGTTGACCCCGGAGATGACAGAACAGTTAAGATTACCGGGATTAACTATGAAGCAGATTTCTATAAATACGACGGCGTCGCGCCTTTCGGCAGCGGTTTCTCCGGCGGATTCAGCAACGGTTTTAGTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
aae58536a30293cae7df155b3fdcf159923ec6dd90d6321de69f67bf49875556
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8286
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
A collection of diverse bacteriophages for biocontrol of ESBL- and AmpC-beta-lactamase-producing E. coli Vitt,A.R., Sorensen,A.N., Bojer,M.S., Bortolaia,V., Sorensen,M.C.H. and Brondsted,L. 2023 — GenBank