Protein

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Genbank accession
YP_009880934.1 [GenBank]
Protein name
baseplate wedge subunit
RBP type
TSP
Evidence DepoScope
Probability 0,92
Protein sequence
MKELVNIGQMVDDGTGDYLREGGIKINNNFTETYDELGDGKNLHPAGAWQTIEAHKLTNGTLNAVFGKSYAVDTGTSKATIKLPKGTPADYNKVIRIRDTFSTWQANAVTIEPASGDTLKGGGTRVFSTNLTDLELVYCRPNRWEYLPNKLLNKISNGDIATVMKKEYLCTEGQTDFLNIFDNNDYNLVNTHVYLRGNLLYYGKDFSDDSDYGSPGATAGELVPLDGKSIRLRTPAQKGDSLMVVTYLDGIAQFRSTYNRLDCTILDAKLTNEVTAPGARLVADLETLDSITVEQLGYVFNSNSGLINTNTLEVYVNGVILNMAGRAGLPMMYCEGADANNLTDCQLMGGNWVTSHNDYTITTNDNGAVTSIEFGRKFEHGDIVTIKWFNNDIGTTMEIDEITDVTDDMYIQRGPEYNISGAVRVTDYTNPVLPNVEPEAQKFVRVQVPGDMFDLLYPVGTIYENAINKSNPVTYMGFGVWTRWGEKRVLVGWTEDNQDTQFGLNNNDLDINGQPTHTAGGTGGNRTITITNDNMPSTVTDKEVLVADVDGPVVIGGCQFDPDDSGPAYYKYRQEKVTTNVTHIPPKPIETLDPYITVYRWMRIA
Physico‐chemical
properties
protein length:605 AA
molecular weight: 66878,92490 Da
isoelectric point:4,62228
aromaticity:0,09091
hydropathy:-0,39653

Domains

Domains [InterPro]
IPR036240
STR
1–233
IPR036240 IPR054430 IPR053827
IPR034695
Unmapped
1–605
IPR034695
DC_2238
STR
1–585
DC_2238
IPR008987
ATT
2–147
IPR008987 IPR056391
G3DSA:1.20.5.960
Unmapped
13–43
G3DSA:1.20.5.960
YP_009880934.1
1 605
Architecture
ATT
STR
ATT
STR
ATT
ATT 1-147 | STR 148-158 | ATT 159-261 | STR 262-451 | ATT 452-604 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009880934.1
1 605
Domain Start End Length (AA) Confidence
N-terminal 1 316 316 0,9380
Central domain 317 515 200 0,3272
C-terminal 516 605 89 0,8969
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-316
Central
317-515
C-terminal
516-605

Taxonomy

  Name Taxonomy ID Lineage
Phage Acinetobacter phage vB_ApiM_fHyAci03
[NCBI] 		2269366 Uroviricota > Caudoviricetes > Pantevenvirales > Twarogvirinae > Lazarusvirus
Host Acinetobacter pittii
[NCBI] 		48296 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Moraxellales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009880934.1 [NCBI]
Genbank nucleotide accession
NC_049438 [NCBI]
CDS location
range 91510 -> 93327
strand +
CDS
ATGAAAGAATTAGTAAATATTGGACAAATGGTTGATGATGGCACAGGAGATTATCTTCGTGAAGGTGGCATCAAGATCAATAACAACTTTACCGAGACCTATGATGAATTAGGCGATGGGAAGAATTTGCATCCTGCTGGTGCTTGGCAGACTATTGAAGCACATAAACTCACAAATGGCACACTGAATGCTGTATTCGGGAAGTCATATGCAGTTGATACGGGAACATCTAAAGCAACAATAAAATTACCTAAAGGCACTCCAGCCGATTACAATAAAGTTATTAGAATTCGAGATACATTTTCTACCTGGCAGGCCAATGCAGTTACAATTGAGCCTGCTAGTGGAGACACATTAAAAGGTGGTGGAACACGTGTCTTTAGTACAAACCTTACTGACTTAGAATTAGTTTATTGTCGTCCTAATCGCTGGGAATATCTACCAAACAAATTACTTAATAAAATTTCAAATGGCGATATTGCTACAGTAATGAAAAAGGAATATTTGTGTACTGAAGGGCAAACAGATTTTCTTAATATTTTTGACAATAATGACTATAACTTAGTCAACACACATGTCTATTTACGTGGCAACTTGCTTTATTACGGCAAAGATTTTTCTGATGATTCCGATTATGGTAGCCCTGGAGCAACGGCTGGCGAACTAGTTCCATTAGATGGCAAAAGTATCAGATTACGTACACCTGCTCAAAAAGGCGATTCATTAATGGTAGTAACTTACCTAGATGGCATCGCACAATTCAGATCAACGTATAACCGTTTGGATTGTACTATTCTTGATGCTAAATTAACCAATGAAGTTACCGCACCAGGTGCACGTTTAGTTGCAGATCTTGAAACATTGGATTCAATAACTGTTGAACAGCTCGGATACGTCTTCAATAGCAATAGTGGTTTAATTAATACCAATACACTGGAAGTGTATGTCAATGGTGTTATTTTGAATATGGCAGGGCGTGCAGGCTTACCGATGATGTATTGTGAAGGCGCTGATGCCAATAATTTGACTGATTGTCAATTAATGGGTGGTAATTGGGTTACTTCACACAATGACTACACAATTACTACAAATGATAACGGAGCGGTAACAAGCATAGAATTTGGGCGAAAATTTGAACATGGTGACATCGTAACTATTAAATGGTTCAACAATGACATTGGCACAACAATGGAAATTGATGAAATCACAGATGTAACAGATGACATGTATATCCAACGTGGTCCTGAATACAATATTTCAGGTGCAGTTCGTGTAACAGATTATACAAACCCAGTTTTACCGAATGTAGAACCAGAAGCTCAGAAATTTGTACGTGTACAAGTGCCGGGCGACATGTTTGATTTGCTATATCCCGTTGGCACCATCTATGAAAATGCTATCAACAAATCTAATCCTGTAACATATATGGGCTTTGGTGTTTGGACAAGATGGGGCGAAAAACGAGTACTTGTTGGCTGGACTGAAGACAACCAAGATACACAGTTTGGTTTAAATAATAATGACCTTGACATTAATGGGCAGCCAACACATACTGCAGGTGGTACAGGCGGAAATCGAACAATTACTATTACAAATGATAATATGCCGTCAACAGTTACTGATAAAGAGGTTCTTGTTGCTGATGTAGATGGGCCTGTTGTAATTGGCGGATGTCAATTTGATCCTGATGATTCCGGGCCGGCATATTATAAATATCGCCAAGAAAAAGTTACAACTAATGTTACTCATATTCCACCTAAACCTATTGAAACACTAGATCCATACATCACAGTGTATCGTTGGATGAGGATTGCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
69e64453d2aab482e9cfbc95b895e12601d7609c9d83b6f4f4a46e839fa60015
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5846
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization of vB_ApiM_fHyAci03, a novel lytic bacteriophage that infects clinical Acinetobacter strains Pulkkinen,E., Wicklund,A., Oduor,J.M.O., Skurnik,M. and Kiljunen,S. 2019 — GenBank