Phage RBP Database

Genbank accession

AAR04638.1 [GenBank]

Protein name

putative tail component

RBP type

TF

Evidence RBPdetect

Probability 0,76

TF

Evidence RBPdetect2

Probability 0,41

Protein sequence

MKQAGMKITYAGVDITQWMYVQMVKRDVGTNHVNTMQKVGISDGQMLQYMSRDVKTIVVTGIVMNDDLVPLRRSLAAAIDADEPQQLIFGDEPDKYYLAIVDSQPTFTEGFRSGTISISFVCPDGGIAHSVATKTADNMPYKNVPVNFAIASHASGSNTTSKDAYPIHMQLSEDLSGKTITTVAKVIVTNYQGKIDSRPQSYIDVKDGLSTGNWKGLINPIPITGNGVYTSAPKTMTKHSLTGTANNIDVEMLNLNATIEVWIKVEIGTTASPWSPNPADPEYYTNTITVHNGGTYPVEPVITATMHADNGFLGFANSQGGVLQFGNPEEIDGYTSEESEVALNLAAVKGSHMDNQAASNNLYWGGDHRTPNEQIGNSIWTEDRYDGWKVEPNWPSITGDHKYWNGPSIKHNLARTHNGNFKSNLTWDVMTRFQTGVSKVGALETTLESDGKPIFQMILKDNSALSDQIWWMCYYKDQLVVNEQLDRNIFTNDKFIQLELQKFGNSIVFRVSPWVGNRGRETTINRQFTFADAASVETKQFSAWFMRDKTWGESTMYLIASTVKWQNVSWYTDIKNRFSDGDVITIDVANTKTYFNGNEDRTLHTLGNQWDKFLLPPGDTIIQLMPSSWSQPFECEVDLKEAWL

Physico‐chemical properties

protein length:	644 AA
molecular weight:	71925,82890 Da
isoelectric point:	5,16197
aromaticity:	0,10093
hydropathy:	-0,40419

Domain architecture

AAR04638.1

1 644 aa

ATT 1–140 · RBD 550–628 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

G3DSA:2.40.30.200
ATT

G3DSA:2.40.30.200 G3DSA:2.60.120.860

G3DSA:2.40.30.200
ATT

G3DSA:2.40.30.200

IPR006520
Unmapped

IPR006520

IPR008841
STR

IPR008841

AAR04638.1

1644 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_0420
STR

DC_0420

AAR04638.1

1644 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
G3DSA:2.40.30.200	ATT	G3DSA:2.40.30.200	1	125	Merged direct domain	G3DSA:2.40.30.200	N-terminal	Low	Positional only	23 proteins / 23 hits
G3DSA:2.40.30.200	ATT	G3DSA:2.40.30.200	1	140	Merged direct domain	G3DSA:2.40.30.200	N-terminal	Low	Positional only	23 proteins / 23 hits
IPR006520	Unmapped	-	9	125	InterPro	Distal tail protein, N-terminal	-	-	-	-
IPR008841	STR	DC_0499	34	122	InterPro cluster	Siphovirus-type tail component, RIFT-related domain	Central	Low	Positional only	178 proteins / 178 hits
G3DSA:2.60.120.860	RBD	G3DSA:2.60.120.860	550	628	Merged direct domain	G3DSA:2.60.120.860	C-terminal	Low	Positional only	5 proteins / 5 hits

Proteins with similar domain architecture

Phage

Lactobacillus phage Lc-Nu [NCBI] · taxon 146269

Uroviricota Caudoviricetes Lacnuvirus

Host

Lacticaseibacillus rhamnosus [NCBI] · taxon 47715

cellular organisms Bacteria Bacillati Bacillota Bacilli Lactobacillales

Genbank protein accession

AAR04638.1 [NCBI]

Genbank nucleotide accession

AY131267 [NCBI]

CDS location

range 13070 -> 15004
strand +

CDS

TTGAAACAAGCAGGCATGAAAATCACATACGCTGGAGTAGATATTACCCAGTGGATGTATGTGCAGATGGTCAAACGTGATGTAGGAACTAATCACGTCAACACAATGCAAAAGGTCGGAATCAGCGATGGCCAGATGTTGCAATACATGTCACGGGACGTCAAGACGATTGTGGTAACTGGGATCGTTATGAATGATGATTTGGTACCACTGAGGCGTTCCTTGGCCGCTGCTATTGATGCGGACGAACCACAGCAACTAATTTTTGGGGATGAGCCGGATAAATATTATCTAGCCATCGTAGACAGTCAGCCTACTTTCACAGAAGGCTTTCGATCAGGGACAATCTCAATCAGCTTCGTCTGTCCCGATGGTGGCATTGCCCACTCGGTAGCCACGAAGACGGCTGACAACATGCCATACAAGAACGTGCCAGTGAATTTTGCCATTGCTTCACACGCCAGTGGATCCAACACGACATCAAAAGATGCATATCCCATTCATATGCAACTTTCAGAAGACTTGTCAGGGAAGACCATTACTACTGTAGCCAAAGTTATCGTCACTAATTATCAGGGAAAGATAGACTCACGTCCTCAATCATATATTGATGTAAAGGACGGTTTATCTACCGGCAACTGGAAAGGGTTAATTAACCCAATTCCTATTACCGGAAATGGTGTTTATACATCAGCACCGAAGACAATGACCAAACATTCGCTAACGGGAACAGCCAATAATATTGATGTTGAAATGTTAAATCTGAATGCCACCATCGAAGTCTGGATTAAGGTTGAAATAGGCACCACTGCTTCTCCATGGTCACCTAACCCAGCGGATCCTGAATACTATACCAACACCATCACGGTACACAATGGTGGCACTTATCCTGTTGAGCCAGTTATTACGGCAACTATGCACGCTGATAACGGCTTTCTAGGATTTGCCAATAGCCAAGGTGGTGTGCTTCAATTTGGCAATCCCGAAGAAATTGATGGCTATACCAGCGAAGAAAGTGAAGTGGCCTTGAATTTGGCAGCCGTTAAAGGCTCGCACATGGATAATCAAGCAGCTTCCAATAATCTTTACTGGGGTGGTGATCATAGGACGCCAAATGAACAGATTGGCAATTCAATTTGGACAGAGGACAGGTACGATGGCTGGAAGGTTGAGCCTAATTGGCCCAGCATTACTGGCGACCACAAGTATTGGAATGGGCCTTCAATCAAACACAACCTTGCTCGGACACATAACGGTAACTTTAAGAGCAATCTGACTTGGGATGTCATGACACGTTTTCAAACTGGTGTCTCAAAGGTTGGTGCGCTCGAAACAACGCTAGAAAGTGACGGCAAGCCAATCTTTCAGATGATACTGAAAGACAATAGTGCACTGTCTGACCAAATATGGTGGATGTGCTACTACAAAGACCAACTAGTCGTCAATGAACAGTTGGATCGCAATATCTTCACTAATGACAAGTTCATTCAGCTAGAATTGCAGAAATTTGGTAATTCAATTGTTTTCAGAGTGTCACCATGGGTTGGCAATCGAGGACGAGAAACGACTATTAACCGTCAATTCACTTTTGCGGACGCTGCTAGTGTCGAGACTAAGCAATTTTCAGCGTGGTTTATGCGAGACAAGACATGGGGCGAGTCGACTATGTATCTAATTGCGTCTACCGTTAAATGGCAGAACGTAAGCTGGTATACAGATATTAAGAATCGCTTTAGCGATGGTGATGTAATTACAATCGATGTGGCTAATACCAAAACTTATTTCAATGGCAATGAAGATCGCACCTTGCATACATTAGGCAACCAGTGGGACAAGTTTCTTTTACCGCCCGGAGATACCATCATTCAGCTCATGCCATCAAGCTGGTCACAACCATTTGAGTGTGAAGTTGATTTGAAGGAGGCGTGGCTATAA

Title	Authors	Date	PMID	Source
The genome of the virulent phage Lc-Nu of probiotic Lactobacillus rhamnosus, and comparative genomics with Lactobacillus casei phages	Tuohimaa,A., Riipinen,K.A., Brandt,K. and Alatossava,T.	2006	16328134	GenBank

Protein

Domains

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)

Literature