Protein

View in Explore
Genbank accession
AAR04638.1 [GenBank]
Protein name
putative tail component
RBP type
TF
Evidence RBPdetect
Probability 0,76
Protein sequence
MKQAGMKITYAGVDITQWMYVQMVKRDVGTNHVNTMQKVGISDGQMLQYMSRDVKTIVVTGIVMNDDLVPLRRSLAAAIDADEPQQLIFGDEPDKYYLAIVDSQPTFTEGFRSGTISISFVCPDGGIAHSVATKTADNMPYKNVPVNFAIASHASGSNTTSKDAYPIHMQLSEDLSGKTITTVAKVIVTNYQGKIDSRPQSYIDVKDGLSTGNWKGLINPIPITGNGVYTSAPKTMTKHSLTGTANNIDVEMLNLNATIEVWIKVEIGTTASPWSPNPADPEYYTNTITVHNGGTYPVEPVITATMHADNGFLGFANSQGGVLQFGNPEEIDGYTSEESEVALNLAAVKGSHMDNQAASNNLYWGGDHRTPNEQIGNSIWTEDRYDGWKVEPNWPSITGDHKYWNGPSIKHNLARTHNGNFKSNLTWDVMTRFQTGVSKVGALETTLESDGKPIFQMILKDNSALSDQIWWMCYYKDQLVVNEQLDRNIFTNDKFIQLELQKFGNSIVFRVSPWVGNRGRETTINRQFTFADAASVETKQFSAWFMRDKTWGESTMYLIASTVKWQNVSWYTDIKNRFSDGDVITIDVANTKTYFNGNEDRTLHTLGNQWDKFLLPPGDTIIQLMPSSWSQPFECEVDLKEAWL
Physico‐chemical
properties
protein length:644 AA
molecular weight: 71925,82890 Da
isoelectric point:5,16197
aromaticity:0,10093
hydropathy:-0,40419

Domains

Domains [InterPro]
G3DSA:2.40.30.200
1–125
G3DSA:2.40.30.200 G3DSA:2.60.120.860
IPR006520
9–125
IPR006520
IPR008841
34–122
IPR008841
AAR04638.1
1 644
Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Lactobacillus phage Lc-Nu
[NCBI] 		146269 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Lactobacillus rhamnosus
[NCBI] 		47715 Bacteria > Firmicutes > Bacilli > Lactobacillales > Lactobacillaceae > Lactobacillus

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AAR04638.1 [NCBI]
Genbank nucleotide accession
AY131267 [NCBI]
CDS location
range 13070 -> 15004
strand +
CDS
TTGAAACAAGCAGGCATGAAAATCACATACGCTGGAGTAGATATTACCCAGTGGATGTATGTGCAGATGGTCAAACGTGATGTAGGAACTAATCACGTCAACACAATGCAAAAGGTCGGAATCAGCGATGGCCAGATGTTGCAATACATGTCACGGGACGTCAAGACGATTGTGGTAACTGGGATCGTTATGAATGATGATTTGGTACCACTGAGGCGTTCCTTGGCCGCTGCTATTGATGCGGACGAACCACAGCAACTAATTTTTGGGGATGAGCCGGATAAATATTATCTAGCCATCGTAGACAGTCAGCCTACTTTCACAGAAGGCTTTCGATCAGGGACAATCTCAATCAGCTTCGTCTGTCCCGATGGTGGCATTGCCCACTCGGTAGCCACGAAGACGGCTGACAACATGCCATACAAGAACGTGCCAGTGAATTTTGCCATTGCTTCACACGCCAGTGGATCCAACACGACATCAAAAGATGCATATCCCATTCATATGCAACTTTCAGAAGACTTGTCAGGGAAGACCATTACTACTGTAGCCAAAGTTATCGTCACTAATTATCAGGGAAAGATAGACTCACGTCCTCAATCATATATTGATGTAAAGGACGGTTTATCTACCGGCAACTGGAAAGGGTTAATTAACCCAATTCCTATTACCGGAAATGGTGTTTATACATCAGCACCGAAGACAATGACCAAACATTCGCTAACGGGAACAGCCAATAATATTGATGTTGAAATGTTAAATCTGAATGCCACCATCGAAGTCTGGATTAAGGTTGAAATAGGCACCACTGCTTCTCCATGGTCACCTAACCCAGCGGATCCTGAATACTATACCAACACCATCACGGTACACAATGGTGGCACTTATCCTGTTGAGCCAGTTATTACGGCAACTATGCACGCTGATAACGGCTTTCTAGGATTTGCCAATAGCCAAGGTGGTGTGCTTCAATTTGGCAATCCCGAAGAAATTGATGGCTATACCAGCGAAGAAAGTGAAGTGGCCTTGAATTTGGCAGCCGTTAAAGGCTCGCACATGGATAATCAAGCAGCTTCCAATAATCTTTACTGGGGTGGTGATCATAGGACGCCAAATGAACAGATTGGCAATTCAATTTGGACAGAGGACAGGTACGATGGCTGGAAGGTTGAGCCTAATTGGCCCAGCATTACTGGCGACCACAAGTATTGGAATGGGCCTTCAATCAAACACAACCTTGCTCGGACACATAACGGTAACTTTAAGAGCAATCTGACTTGGGATGTCATGACACGTTTTCAAACTGGTGTCTCAAAGGTTGGTGCGCTCGAAACAACGCTAGAAAGTGACGGCAAGCCAATCTTTCAGATGATACTGAAAGACAATAGTGCACTGTCTGACCAAATATGGTGGATGTGCTACTACAAAGACCAACTAGTCGTCAATGAACAGTTGGATCGCAATATCTTCACTAATGACAAGTTCATTCAGCTAGAATTGCAGAAATTTGGTAATTCAATTGTTTTCAGAGTGTCACCATGGGTTGGCAATCGAGGACGAGAAACGACTATTAACCGTCAATTCACTTTTGCGGACGCTGCTAGTGTCGAGACTAAGCAATTTTCAGCGTGGTTTATGCGAGACAAGACATGGGGCGAGTCGACTATGTATCTAATTGCGTCTACCGTTAAATGGCAGAACGTAAGCTGGTATACAGATATTAAGAATCGCTTTAGCGATGGTGATGTAATTACAATCGATGTGGCTAATACCAAAACTTATTTCAATGGCAATGAAGATCGCACCTTGCATACATTAGGCAACCAGTGGGACAAGTTTCTTTTACCGCCCGGAGATACCATCATTCAGCTCATGCCATCAAGCTGGTCACAACCATTTGAGTGTGAAGTTGATTTGAAGGAGGCGTGGCTATAA

Tertiary structure

PDB ID
64054b510f3209ea27b7602b0bbf73d7094557743176a8d3e07e14f210cfe213
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7866
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The genome of the virulent phage Lc-Nu of probiotic Lactobacillus rhamnosus, and comparative genomics with Lactobacillus casei phages Tuohimaa,A., Riipinen,K.A., Brandt,K. and Alatossava,T. 2006 16328134 GenBank