Protein

View in Explore
Genbank accession
YP_012791976.1 [GenBank]
Protein name
tail tubular protein B
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MSQQEQTEIQGPFTRSFGGLNLSNSVGALPVSDSPVFHNCDISEDGAVVRRKGTALVNTYNVNNASGKAWAETIRTKLGSEYFILSNEVGILISLMRDDEVVGMPREVAVVAKSSIWTVPPSSMNFIPVNAPYDRLLILTPEHPIVQLSFLERTLTFTCTTNNGGGVFTLTAPISVNDTTLWRDTNASSYIVTDATNNVYPVSVKNPDFSFRLTGAFVVGQTYTLTIRQITWQWWAESMYYEGQDMMQNTSRFNVTSIDQNVKVPDRLITDIDPVYKNSQGIGLYAYWSSRFDTNGYLGPTPSPNTADEYGFSGGGRFTPPSLIPGATLQAAPFYITFGTTYGGSPGPINQVNILRLRELRFNGGTGAIPNDLQVYNDTQQLTWNNVPYLLDNFHTYSVTYNATDRLISFMNLPGDATRVANYFAILGPTNNLPANAPLHISCLSASAYLTGSRRVWYRNLPTTGGVLDGCYVRAYGIGKFVDYSKRSFHAIGTVYRDRLILVNPSTSTDQLLISEIADATVPGEFYQFMQVTDMLLGVTTDPFTLNVTSEGRERITAVTGWQKRLFVFTGSNTYSVEGGEQFGESSYAVNLVSTYGAFNQNCVVVTNLTVLYMNKFGLFDLMNKPNTDSYGAFERSMKIRTLFTDLSGGTEDNLHWVRYNESNNRLYVGLAVKGDTRTTSRNLMLNVTWDSWSTLSSAAPFQMYPAIQLFKYMLWLTNINAPLTVAMLCTDMPFYMDFASTRTHIYPFSFAAGQVNIPVVGDSRGIINLPIPTTPGVNDFNVSNSTKTGKVYARNVGAAGAEVASMRNPMRDYANTLDLLGGNVNASQFGMVLTGGVEPYTVYPTVTYNGVAPNQWTVTWASGLNNRPLPSQNNTCMVGMLYPSVYASPVFDLESLGRLKRLKRLHLQMDTTIVAGTKYNLNTTFTQVSLINTALVGVVSNYNENVVPAVVQYQFDNRYELRQVQELTLPLQGFGCDYQFYVTSVGAEAFKLAAYEFDIQPQRDKRYVRR
Physico‐chemical
properties
protein length:1011 AA
molecular weight: 112149,26810 Da
isoelectric point:5,90429
aromaticity:0,11672
hydropathy:-0,14708

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_012791976.1
1 1011
Domain Start End Length (AA) Confidence
N-terminal 1 225 225 0,8884
Central domain 226 490 266 0,7650
C-terminal 491 1011 520 0,1332
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-225
Central
226-490
C-terminal
491-1011

Taxonomy

  Name Taxonomy ID Lineage
Phage Leptolyngbya phage LPP-1
[NCBI] 		2996049 Uroviricota > Caudoviricetes > Saffermanviridae > Morrisvirus LPP1 >
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_012791976.1 [NCBI]
Genbank nucleotide accession
NC_111528 [NCBI]
CDS location
range 28951 -> 31986
strand -
CDS
ATGAGCCAGCAAGAACAAACAGAAATCCAAGGTCCGTTTACTCGCTCGTTTGGCGGGTTAAACCTTTCAAACTCGGTGGGGGCGCTACCTGTCAGCGACTCACCGGTGTTCCACAACTGTGACATCAGCGAAGATGGCGCGGTAGTGAGACGCAAAGGCACTGCACTAGTCAACACCTACAACGTCAATAATGCTTCCGGTAAGGCGTGGGCAGAAACTATCCGCACCAAGCTGGGAAGCGAGTACTTCATCCTCAGCAATGAAGTGGGGATACTTATCTCGCTCATGCGTGACGATGAAGTAGTGGGGATGCCACGAGAAGTGGCGGTAGTTGCAAAGTCCAGCATCTGGACAGTACCCCCTTCTAGTATGAACTTCATACCGGTCAATGCACCGTATGACCGTTTACTCATCCTTACGCCCGAGCACCCTATCGTCCAGCTTTCATTCTTAGAGCGCACTCTCACGTTTACCTGCACGACTAATAATGGTGGGGGAGTGTTCACACTTACCGCCCCCATCTCGGTTAACGACACCACGCTGTGGAGAGACACTAACGCGTCAAGTTATATCGTGACTGACGCAACTAACAACGTCTACCCAGTGAGCGTTAAGAACCCCGACTTTAGCTTCAGGCTAACCGGGGCTTTTGTCGTGGGGCAGACGTACACTTTGACCATCCGCCAGATTACCTGGCAGTGGTGGGCTGAGTCCATGTACTACGAAGGGCAGGACATGATGCAAAACACCAGTCGCTTCAATGTCACGTCCATCGACCAAAACGTCAAGGTGCCTGACAGACTCATCACTGACATAGACCCAGTGTACAAGAATAGTCAGGGTATCGGGTTGTACGCTTACTGGTCGAGTCGCTTTGATACCAACGGTTACCTCGGACCGACGCCTAGCCCTAACACAGCAGATGAGTACGGGTTCTCTGGCGGGGGGAGATTCACGCCCCCATCTTTAATACCAGGGGCAACGCTTCAAGCAGCACCTTTTTATATAACGTTTGGTACTACGTATGGCGGGTCGCCTGGGCCTATCAACCAGGTTAACATCCTGCGGCTCCGAGAGTTGCGGTTTAACGGGGGGACAGGGGCGATACCCAACGACCTTCAGGTGTACAACGACACTCAGCAGCTTACCTGGAATAACGTTCCCTACCTTTTAGACAACTTTCACACCTACTCAGTGACCTACAATGCGACTGATAGGCTCATCTCATTCATGAACCTACCCGGTGACGCAACACGGGTTGCAAACTACTTTGCCATCCTAGGTCCGACGAACAACCTGCCTGCTAACGCCCCCCTCCATATCTCCTGCCTATCGGCTTCAGCATACCTCACAGGCTCTCGTCGAGTCTGGTATCGTAACTTGCCAACTACGGGTGGGGTATTAGACGGGTGCTACGTTAGAGCATACGGCATCGGCAAGTTCGTTGATTACTCCAAACGTTCGTTTCACGCCATCGGTACAGTTTACCGTGACCGGCTTATCTTAGTCAACCCCTCTACTTCTACCGACCAGTTGCTTATCAGCGAGATAGCAGACGCCACTGTACCTGGTGAGTTCTACCAGTTTATGCAGGTGACAGACATGTTGTTGGGGGTGACGACTGACCCGTTCACTTTGAACGTTACCAGTGAGGGGAGAGAACGCATCACAGCCGTTACTGGCTGGCAGAAGCGTCTCTTTGTCTTTACCGGTAGCAACACTTATTCTGTGGAGGGGGGAGAACAGTTTGGGGAGTCCAGTTATGCAGTCAACCTGGTATCGACCTATGGTGCGTTTAACCAAAACTGTGTGGTAGTGACTAACCTCACCGTGCTGTACATGAACAAGTTTGGGCTGTTCGACTTGATGAACAAACCGAACACCGACAGCTACGGTGCATTTGAGCGTAGCATGAAGATACGCACGCTGTTCACCGACTTGTCAGGTGGCACGGAAGACAACTTGCATTGGGTTCGCTACAACGAGTCTAACAACCGCTTGTATGTGGGGCTGGCAGTTAAAGGCGACACTCGCACGACCAGCCGCAACTTGATGCTTAACGTGACGTGGGACAGTTGGTCAACGCTCTCTAGCGCTGCCCCCTTCCAGATGTACCCTGCCATTCAACTGTTCAAGTACATGCTGTGGCTGACTAACATCAATGCCCCCCTCACAGTTGCCATGCTGTGTACCGACATGCCATTTTACATGGACTTTGCCAGTACCCGTACTCACATCTACCCATTCAGCTTTGCAGCAGGACAGGTAAACATTCCGGTGGTGGGGGACAGTCGCGGCATCATTAACCTCCCTATCCCCACCACACCTGGGGTTAATGACTTCAACGTCAGCAACTCCACCAAGACCGGCAAAGTGTATGCACGCAACGTAGGGGCAGCAGGCGCAGAAGTAGCGTCGATGCGTAACCCAATGCGAGACTACGCCAACACCCTAGATTTATTGGGGGGTAATGTCAACGCCAGCCAATTCGGTATGGTACTTACGGGTGGGGTGGAACCCTACACGGTTTACCCTACCGTTACGTACAATGGGGTAGCCCCCAATCAATGGACTGTGACCTGGGCGTCTGGTTTGAACAACCGCCCCCTCCCTAGCCAGAACAATACCTGTATGGTGGGGATGCTTTACCCTAGCGTGTACGCTTCACCGGTATTCGACCTGGAGTCACTAGGGCGCCTTAAGCGCCTTAAGCGCCTTCACCTTCAGATGGACACAACCATTGTGGCGGGTACCAAGTACAACTTGAACACCACCTTCACGCAGGTCTCACTTATTAATACCGCTTTGGTGGGGGTAGTGTCCAACTACAACGAGAACGTTGTACCAGCGGTCGTGCAGTACCAGTTTGACAACCGTTACGAGTTGCGCCAGGTGCAAGAGTTGACCCTCCCTCTTCAGGGATTTGGGTGTGACTACCAGTTTTACGTTACTAGTGTGGGGGCAGAAGCTTTCAAGCTAGCTGCCTATGAGTTTGACATTCAACCCCAACGCGACAAACGCTACGTCAGGAGATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
32cf6dc7fe25592b3e8a260e8739bd3a22ec7d910ec0567b7cfbd29cbd89cc66
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2757
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Sequencing the genomes of LPP-1, the first isolated cyanophage, and its relative LPP-2 reveal different integration mechanisms in closely related phages Shaalan,H., Cattan-Tsaushu,E., Li,K. and Avrani,S. 2023 — GenBank