Protein

View in Explore
Genbank accession
YP_012791976.1 [GenBank]
Protein name
tail tubular protein B
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,46
Seq2Symm
C3 confidence 0,359
C3 0,359
C1 0,110
I 0,019
Predicted homo-oligomer symmetry (Seq2Symm, per-class probabilities; C1 = monomer, C2 = dimer, C3 = trimer).
Protein sequence
MSQQEQTEIQGPFTRSFGGLNLSNSVGALPVSDSPVFHNCDISEDGAVVRRKGTALVNTYNVNNASGKAWAETIRTKLGSEYFILSNEVGILISLMRDDEVVGMPREVAVVAKSSIWTVPPSSMNFIPVNAPYDRLLILTPEHPIVQLSFLERTLTFTCTTNNGGGVFTLTAPISVNDTTLWRDTNASSYIVTDATNNVYPVSVKNPDFSFRLTGAFVVGQTYTLTIRQITWQWWAESMYYEGQDMMQNTSRFNVTSIDQNVKVPDRLITDIDPVYKNSQGIGLYAYWSSRFDTNGYLGPTPSPNTADEYGFSGGGRFTPPSLIPGATLQAAPFYITFGTTYGGSPGPINQVNILRLRELRFNGGTGAIPNDLQVYNDTQQLTWNNVPYLLDNFHTYSVTYNATDRLISFMNLPGDATRVANYFAILGPTNNLPANAPLHISCLSASAYLTGSRRVWYRNLPTTGGVLDGCYVRAYGIGKFVDYSKRSFHAIGTVYRDRLILVNPSTSTDQLLISEIADATVPGEFYQFMQVTDMLLGVTTDPFTLNVTSEGRERITAVTGWQKRLFVFTGSNTYSVEGGEQFGESSYAVNLVSTYGAFNQNCVVVTNLTVLYMNKFGLFDLMNKPNTDSYGAFERSMKIRTLFTDLSGGTEDNLHWVRYNESNNRLYVGLAVKGDTRTTSRNLMLNVTWDSWSTLSSAAPFQMYPAIQLFKYMLWLTNINAPLTVAMLCTDMPFYMDFASTRTHIYPFSFAAGQVNIPVVGDSRGIINLPIPTTPGVNDFNVSNSTKTGKVYARNVGAAGAEVASMRNPMRDYANTLDLLGGNVNASQFGMVLTGGVEPYTVYPTVTYNGVAPNQWTVTWASGLNNRPLPSQNNTCMVGMLYPSVYASPVFDLESLGRLKRLKRLHLQMDTTIVAGTKYNLNTTFTQVSLINTALVGVVSNYNENVVPAVVQYQFDNRYELRQVQELTLPLQGFGCDYQFYVTSVGAEAFKLAAYEFDIQPQRDKRYVRR
Physico‐chemical
properties
protein length:1011 AA
molecular weight: 112149,26810 Da
isoelectric point:5,90429
aromaticity:0,11672
hydropathy:-0,14708

Tail Spike Domain Segmentation

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout
YP_012791976.1
1 1011 aa
Domain Start End Length (AA) Confidence
N-terminal 1 225 225 0,8884
Central domain 226 490 266 0,7650
C-terminal 491 1011 520 0,1332
N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Taxonomy

Phage
Leptolyngbya phage LPP-1 [NCBI] · taxon 2996049
Uroviricota Caudoviricetes Saffermanviridae Morrisvirus Morrisvirus LPP1
Host
Leptolyngbya boryana IU 594 [NCBI] · taxon 462680
Cyanobacteriota Cyanophyceae Leptolyngbyales Leptolyngbyaceae Leptolyngbya Leptolyngbya boryana

Coding sequence (CDS)

Genbank protein accession
YP_012791976.1 [NCBI]
Genbank nucleotide accession
NC_111528 [NCBI]
CDS location
range 28951 -> 31986
strand -
CDS
ATGAGCCAGCAAGAACAAACAGAAATCCAAGGTCCGTTTACTCGCTCGTTTGGCGGGTTAAACCTTTCAAACTCGGTGGGGGCGCTACCTGTCAGCGACTCACCGGTGTTCCACAACTGTGACATCAGCGAAGATGGCGCGGTAGTGAGACGCAAAGGCACTGCACTAGTCAACACCTACAACGTCAATAATGCTTCCGGTAAGGCGTGGGCAGAAACTATCCGCACCAAGCTGGGAAGCGAGTACTTCATCCTCAGCAATGAAGTGGGGATACTTATCTCGCTCATGCGTGACGATGAAGTAGTGGGGATGCCACGAGAAGTGGCGGTAGTTGCAAAGTCCAGCATCTGGACAGTACCCCCTTCTAGTATGAACTTCATACCGGTCAATGCACCGTATGACCGTTTACTCATCCTTACGCCCGAGCACCCTATCGTCCAGCTTTCATTCTTAGAGCGCACTCTCACGTTTACCTGCACGACTAATAATGGTGGGGGAGTGTTCACACTTACCGCCCCCATCTCGGTTAACGACACCACGCTGTGGAGAGACACTAACGCGTCAAGTTATATCGTGACTGACGCAACTAACAACGTCTACCCAGTGAGCGTTAAGAACCCCGACTTTAGCTTCAGGCTAACCGGGGCTTTTGTCGTGGGGCAGACGTACACTTTGACCATCCGCCAGATTACCTGGCAGTGGTGGGCTGAGTCCATGTACTACGAAGGGCAGGACATGATGCAAAACACCAGTCGCTTCAATGTCACGTCCATCGACCAAAACGTCAAGGTGCCTGACAGACTCATCACTGACATAGACCCAGTGTACAAGAATAGTCAGGGTATCGGGTTGTACGCTTACTGGTCGAGTCGCTTTGATACCAACGGTTACCTCGGACCGACGCCTAGCCCTAACACAGCAGATGAGTACGGGTTCTCTGGCGGGGGGAGATTCACGCCCCCATCTTTAATACCAGGGGCAACGCTTCAAGCAGCACCTTTTTATATAACGTTTGGTACTACGTATGGCGGGTCGCCTGGGCCTATCAACCAGGTTAACATCCTGCGGCTCCGAGAGTTGCGGTTTAACGGGGGGACAGGGGCGATACCCAACGACCTTCAGGTGTACAACGACACTCAGCAGCTTACCTGGAATAACGTTCCCTACCTTTTAGACAACTTTCACACCTACTCAGTGACCTACAATGCGACTGATAGGCTCATCTCATTCATGAACCTACCCGGTGACGCAACACGGGTTGCAAACTACTTTGCCATCCTAGGTCCGACGAACAACCTGCCTGCTAACGCCCCCCTCCATATCTCCTGCCTATCGGCTTCAGCATACCTCACAGGCTCTCGTCGAGTCTGGTATCGTAACTTGCCAACTACGGGTGGGGTATTAGACGGGTGCTACGTTAGAGCATACGGCATCGGCAAGTTCGTTGATTACTCCAAACGTTCGTTTCACGCCATCGGTACAGTTTACCGTGACCGGCTTATCTTAGTCAACCCCTCTACTTCTACCGACCAGTTGCTTATCAGCGAGATAGCAGACGCCACTGTACCTGGTGAGTTCTACCAGTTTATGCAGGTGACAGACATGTTGTTGGGGGTGACGACTGACCCGTTCACTTTGAACGTTACCAGTGAGGGGAGAGAACGCATCACAGCCGTTACTGGCTGGCAGAAGCGTCTCTTTGTCTTTACCGGTAGCAACACTTATTCTGTGGAGGGGGGAGAACAGTTTGGGGAGTCCAGTTATGCAGTCAACCTGGTATCGACCTATGGTGCGTTTAACCAAAACTGTGTGGTAGTGACTAACCTCACCGTGCTGTACATGAACAAGTTTGGGCTGTTCGACTTGATGAACAAACCGAACACCGACAGCTACGGTGCATTTGAGCGTAGCATGAAGATACGCACGCTGTTCACCGACTTGTCAGGTGGCACGGAAGACAACTTGCATTGGGTTCGCTACAACGAGTCTAACAACCGCTTGTATGTGGGGCTGGCAGTTAAAGGCGACACTCGCACGACCAGCCGCAACTTGATGCTTAACGTGACGTGGGACAGTTGGTCAACGCTCTCTAGCGCTGCCCCCTTCCAGATGTACCCTGCCATTCAACTGTTCAAGTACATGCTGTGGCTGACTAACATCAATGCCCCCCTCACAGTTGCCATGCTGTGTACCGACATGCCATTTTACATGGACTTTGCCAGTACCCGTACTCACATCTACCCATTCAGCTTTGCAGCAGGACAGGTAAACATTCCGGTGGTGGGGGACAGTCGCGGCATCATTAACCTCCCTATCCCCACCACACCTGGGGTTAATGACTTCAACGTCAGCAACTCCACCAAGACCGGCAAAGTGTATGCACGCAACGTAGGGGCAGCAGGCGCAGAAGTAGCGTCGATGCGTAACCCAATGCGAGACTACGCCAACACCCTAGATTTATTGGGGGGTAATGTCAACGCCAGCCAATTCGGTATGGTACTTACGGGTGGGGTGGAACCCTACACGGTTTACCCTACCGTTACGTACAATGGGGTAGCCCCCAATCAATGGACTGTGACCTGGGCGTCTGGTTTGAACAACCGCCCCCTCCCTAGCCAGAACAATACCTGTATGGTGGGGATGCTTTACCCTAGCGTGTACGCTTCACCGGTATTCGACCTGGAGTCACTAGGGCGCCTTAAGCGCCTTAAGCGCCTTCACCTTCAGATGGACACAACCATTGTGGCGGGTACCAAGTACAACTTGAACACCACCTTCACGCAGGTCTCACTTATTAATACCGCTTTGGTGGGGGTAGTGTCCAACTACAACGAGAACGTTGTACCAGCGGTCGTGCAGTACCAGTTTGACAACCGTTACGAGTTGCGCCAGGTGCAAGAGTTGACCCTCCCTCTTCAGGGATTTGGGTGTGACTACCAGTTTTACGTTACTAGTGTGGGGGCAGAAGCTTTCAAGCTAGCTGCCTATGAGTTTGACATTCAACCCCAACGCGACAAACGCTACGTCAGGAGATAA

Genome Context

Tertiary structure

YP_012791976.1
ESMFold2 structure
Source ESMFold2
pLDDT 50.9
Oligomeric state monomer
Download structure

Literature

Title Authors Date PMID Source
Sequencing the genomes of LPP-1, the first isolated cyanophage, and its relative LPP-2 reveal different integration mechanisms in closely related phages Shaalan,H., Cattan-Tsaushu,E., Li,K. and Avrani,S. 2023 37164560 GenBank