Protein

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Genbank accession
ARB13006.1 [GenBank]
Protein name
tail fiber protein
RBP type
TSP
Evidence RBPdetect
Probability 0,65
TF
Evidence Phold
Probability 1,00
Protein sequence
MADLSLYKVDLDTPQPNGRKGESPRAAFTKYNDLLAHLEAGGGGSFISATEPTQTFAFMEWIDTSTTPAIIKRRNADDNAWITIGSYEKPITDFVDKVDGKGLSTNDYTNEDKVIVDGVGDALNAGKVLSTNDYTNEDKAIVDGVGNALNTKVDKVTGKELSTNDYTDEDKNIVKSVLWTSDANFIAGMCSVQSGQQYVAVQNSGPNNGGAVNPSTDTDWSHWKPTWALNQVENRLKGNQNWNIPGRTGHPLPDATPRDYPVGAEIALGVFTELEITNATLIDRVFSADAGALKINNNYDISGFFGIKLHDNRIAVAAPNSISGTGVSKTKSFIYVNINRLIALGIPRGAHKFVGCSELPGIWPDVSEEESADAVLFNKEYASVPIGAEIAFDTPPPTNDPRFRFVKLTADDAYNGSLLNNKVISGTAPNLVVKMTVNSSLSPINGQQIFMLNTMGAMPTPGLTSGVIIQDAMRNLTGSVRALYTGGSEQYDGSLAMSIYGGSPAKVGATGVDPGANYTISFDASLQVPTADRFQVFGVSQVFYKRIF
Physico‐chemical
properties
protein length:548 AA
molecular weight: 58800,97100 Da
isoelectric point:4,84998
aromaticity:0,08577
hydropathy:-0,25730

Domains

Domains [InterPro]

No domain annotations available.

Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage H20
[NCBI] 		1965457 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
ARB13006.1 [NCBI]
Genbank nucleotide accession
KY658675.3 [NCBI]
CDS location
range 47366 -> 49012
strand +
CDS
ATGGCTGATTTATCGCTATATAAAGTTGATCTAGATACACCACAACCAAACGGAAGAAAAGGCGAAAGCCCAAGAGCCGCGTTTACAAAATATAACGACCTTCTCGCTCACCTTGAAGCTGGTGGTGGTGGTAGCTTTATTTCAGCTACAGAACCAACACAAACATTCGCATTCATGGAGTGGATAGATACATCAACCACGCCAGCTATTATCAAGCGAAGAAACGCAGATGATAATGCATGGATAACGATCGGTAGTTATGAAAAGCCAATCACTGACTTTGTGGATAAAGTCGACGGAAAGGGACTTTCAACCAACGACTACACCAATGAAGATAAAGTAATTGTTGATGGTGTTGGTGATGCGCTTAATGCAGGTAAGGTTCTATCAACCAACGACTACACCAATGAAGATAAAGCAATTGTTGATGGTGTTGGCAATGCGCTTAACACGAAAGTAGATAAGGTTACCGGAAAAGAACTTTCAACCAACGACTATACCGATGAAGATAAAAACATCGTAAAGTCTGTATTATGGACAAGTGATGCAAATTTCATTGCTGGCATGTGCAGCGTACAAAGCGGCCAGCAGTACGTCGCCGTGCAAAATAGCGGACCAAACAACGGCGGCGCTGTTAATCCATCAACAGACACAGACTGGAGCCATTGGAAACCAACTTGGGCATTAAACCAAGTCGAAAACCGCCTGAAAGGAAATCAAAACTGGAATATACCGGGGCGCACTGGGCATCCACTTCCTGATGCGACGCCAAGGGACTATCCCGTTGGAGCTGAAATTGCTCTTGGTGTTTTTACAGAACTAGAAATAACCAATGCAACATTGATTGATCGGGTTTTTTCGGCGGATGCTGGCGCGCTAAAAATTAATAACAATTACGATATTTCAGGATTTTTTGGAATTAAATTACACGACAATCGTATTGCTGTAGCTGCTCCAAATTCTATATCCGGCACCGGAGTATCGAAAACAAAAAGCTTTATTTATGTAAATATAAACAGACTTATCGCGCTAGGAATACCACGCGGAGCACACAAATTCGTGGGCTGTAGCGAACTTCCCGGCATTTGGCCAGATGTGAGTGAGGAAGAGTCTGCTGATGCTGTTCTGTTTAACAAAGAGTATGCGTCAGTGCCGATTGGTGCTGAAATAGCGTTCGATACGCCACCACCAACAAATGACCCGCGTTTCCGTTTTGTTAAGCTAACTGCTGACGATGCTTACAATGGTAGCCTTCTCAATAACAAAGTGATTTCTGGAACGGCTCCAAATTTAGTTGTGAAAATGACCGTAAACTCTTCGCTGTCACCTATCAACGGACAGCAAATTTTCATGCTAAACACAATGGGAGCAATGCCAACTCCGGGCCTAACTTCTGGTGTGATTATTCAAGATGCAATGCGTAACTTAACTGGCTCTGTTCGCGCCCTGTATACTGGCGGCAGTGAGCAATACGATGGCTCTCTAGCTATGTCGATTTACGGCGGTAGTCCTGCTAAAGTTGGAGCTACAGGAGTCGATCCAGGCGCTAATTACACAATATCTTTTGATGCATCACTGCAAGTTCCAACAGCAGACAGATTCCAAGTTTTTGGGGTTAGTCAAGTATTCTACAAGAGGATTTTCTAA

Tertiary structure

PDB ID
cb8375a5e2ff985b0dd491dc0aaf68b259bc57e16f35284b828dab9588d76ee7
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5304
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Stumbling across the same phage: Comparative genomics of widespread temperate phages infecting the fish pathogen Vibrio anguillarum Kalatzis,P.G., Rorbo,N., Castillo,D., Mauritzen,J.J., Jorgensen,J., Kokkari,C., Zhang,F., Katharios,P. and Middelboe,M. — — GenBank