Protein

View in Explore
Genbank accession
WKW35284.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,94
Protein sequence
MATLDWKPQTDPDLRTELGSAQGADMIGLPQGGTVAQGVDVVTPAMFGAVGDGVADDSVAIQAAMDYCQINNRKLVIPSRRYRITKPLLYRNQGFYNYEIEGHGGAAVIIMDSLEKTGITAPDAFGDDFNVNAAMVVLNDTNQSKYCRISGLRFESPVGAEYAIYVGQTENSYIHDCFCTGFTFGWYDIGSWICRIERCVARSIVDTGFFKKTGTSTNISECYADQMERGYYLGGGYSSIVNCACDKTTRWGYYFKGGPAGTDLATFSMKGCGSEQSGADSVFYVDGLVSLSIEDHNAFNDPSLSAAPAALLSMASNTSYSQVVLKNIRTVNVDTLILDAADHNYFDLTNVTCRSAMSKEFYLGSNSRVLKRTYDGTRFITSNDQVGIGFTESDIVDGWTDLTLSGLRNGQFVIRRSISVSRTSGDAGAAVVTLLLI
Physico‐chemical
properties
protein length:437 AA
molecular weight: 47384,58480 Da
isoelectric point:4,81457
aromaticity:0,10297
hydropathy:-0,09634

Domains

Domains [InterPro]
IPR012334
STR
9–429
IPR012334
DC_1603
STR
24–258
DC_1603 DC_2316
IPR011050
STR
40–279
IPR011050
WKW35284.1
1 437
Architecture
STR
STR 9-437
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WKW35284.1
1 437
Domain Start End Length (AA) Confidence
N-terminal 1 56 56 0,9691
Central domain 57 386 331 0,9762
C-terminal 387 437 50 0,9029
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-56
Central
57-386
C-terminal
387-437

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage M01
[NCBI] 		3054915 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Escherichia sp.
[NCBI] 		1884818 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WKW35284.1 [NCBI]
Genbank nucleotide accession
OR061069.1 [NCBI]
CDS location
range 24422 -> 25735
strand +
CDS
TTGGCAACGCTAGACTGGAAACCGCAGACAGACCCGGATTTGCGTACGGAGTTAGGGTCTGCACAAGGTGCCGATATGATCGGACTCCCGCAAGGTGGTACTGTGGCGCAAGGGGTAGATGTGGTAACGCCCGCTATGTTTGGCGCTGTTGGCGACGGCGTTGCAGATGACTCAGTTGCAATACAGGCCGCAATGGATTATTGCCAGATTAACAATAGAAAGCTAGTCATTCCATCCCGGCGCTATCGAATCACCAAGCCATTGCTATATCGCAATCAAGGTTTTTATAACTATGAGATTGAAGGGCACGGAGGTGCTGCTGTAATCATCATGGATTCTCTGGAAAAAACTGGAATTACTGCGCCTGATGCCTTTGGCGATGATTTTAACGTTAACGCCGCGATGGTAGTTCTGAATGACACTAACCAGAGTAAGTATTGCCGCATTAGTGGATTGCGCTTCGAATCACCAGTTGGTGCTGAATACGCTATTTATGTTGGGCAAACCGAGAATAGCTATATCCATGACTGCTTTTGTACTGGGTTCACATTTGGATGGTACGACATTGGATCATGGATATGCCGGATAGAGCGATGTGTCGCGCGCAGTATTGTAGATACTGGTTTTTTCAAGAAGACTGGGACGAGTACTAATATCAGTGAATGCTATGCGGACCAGATGGAGCGAGGGTATTATTTAGGCGGTGGGTATTCGTCGATAGTAAATTGCGCATGTGATAAGACCACGCGCTGGGGTTATTACTTTAAAGGCGGCCCTGCAGGAACCGATTTAGCTACGTTCAGTATGAAAGGGTGCGGCTCAGAGCAATCAGGTGCAGATTCAGTATTCTACGTGGACGGCTTGGTTTCGCTAAGCATAGAAGACCATAACGCGTTCAACGATCCTTCTTTATCCGCCGCGCCAGCTGCATTACTTAGCATGGCTTCGAATACATCATATTCACAAGTTGTGCTGAAAAATATTAGAACAGTAAATGTAGATACATTAATTTTGGATGCTGCTGACCATAATTATTTTGATTTAACAAACGTCACATGTCGTAGCGCCATGTCTAAAGAGTTTTACTTAGGGAGTAATTCAAGAGTTTTAAAAAGGACGTATGATGGCACGCGATTTATTACTAGCAACGACCAAGTTGGTATTGGATTTACGGAATCTGATATCGTTGACGGATGGACAGATCTCACTTTATCTGGGTTGCGAAATGGGCAGTTTGTAATTAGAAGGTCTATATCCGTATCTAGGACTTCGGGAGACGCTGGTGCGGCAGTTGTAACACTCCTTTTAATATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
093459acebacccf59bbdca4a251ef82012577c43485cdc4875cde6673fb6990d
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7974
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genome analysis of three bacteriophages targeting colistin resistant clinical isolate of e. coli, host receptor prediction using machine learning tools and its evaluation alone and as cocktail to mitigate the host in vitro and in vivo Sundaramoorthy,N.S., Ku,V., Nair,V.G., Kavi Bharathi,R., Roy,J.S., Malarvizhi,R., Srinath,S., Kumar,S., Prakash Sankaran,S. and Mohan,S. 2023-07-10 — GenBank