Protein

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Genbank accession
AZU97917.1 [GenBank]
Protein name
coil containing protein
RBP type
TSP
Evidence RBPdetect
Probability 0,89
TF
Evidence RBPdetect2
Probability 0,56
Protein sequence
MPYITHQKDPAMIAPPDCYQVPDGTHLVTWLHETFVDADAMCGDLACDIIINGRVIYRNDDDNYNPNELDFITLNAMDTVSIVNRPAGIEVVAIVIAVISIAASVYMMATMNTPQLPGAGTQANESPNNRLNAATNEFRPNQAIPECFGRGVSYPDFAQPSYYFYENNVRRQVELFTISVGTVNVPEIRVAETEVSEIPNTSATVYLPGQSVPNEYLNVHRGASTVSEDVLQAPNDGNVIKGNVTFGVIGGNPTTDLTFSDKNVIYDLALSAGGYIYLRSSESLSIYPTSGTAQVSDICPVGTQALRNGSVFHRTSQAVGGEITALDFGALTATVGGVSVTLGAAESSLPTLNGVLEITNVDINATPAVVTVDHVSAINGTYVGSVGRGYSQGVIGEGTNGELDTWVGWFEVPGDEIGEVWIHWKAPQGIRNLDGDGNSISASITLEMQIESLDSNGDPTGNIWTQNPVLQGNTLDAQFRTTIFTPEDFPAMTRSGYRVRTRRITNVISGQGRASERVQLEGYVSVTPYSNPNFGDVTMLLMLRNASLFGADQAGKKINCDYERLLPTYDRNTGVYDQNTLTATDSFADAAAYTLIKAGGTPESRVDLSGLYEIYDGLSDPQLGGFTFTFDDENVSMGERIDAICAVARVSSFGENALWEFSRDEAKPVRSALFNRRSLIDNQGQQTYMLQRSDDADSVIVYYVDPDTNTEKSIKRRIDIESAAIVNGETGSVPKEIRLTGCRNSFQATNRADLEIRRIAYQRHTIRDIARREALEVRLTDRVGWVDINDTDYFDGEILGINGSTYDTSERFEPIDGETYFVYITDNEGYPSNSVQCFPRTDTEFGFIASGISGAFLPNGDEQLGSRYFIANASNLSAQDFTLVKRAPTGDRKVEIELVSYDSRMYEMDDVTLPDGIAFVPVGIVSTDYQQTPNAAQATLTFESDGDITFTGGSSIWHSNAPNTGIGQGYQLKVSQTSGDTPSADFALDTWVDMTTSRTLTLDQSGVDVADAIMEVQIREIADPSNIASGEVRLVSAELGALSLPVSVTATVANQPNEATCRFDLESDGTWTANDGQVGAYITSGYNVGSQYEARATNLAGDTPAGLFDVWVALDGSGTEWTLYTQASATATFDVEVREIANTANTNTCTVTLNAGVA
Physico‐chemical
properties
protein length:1158 AA
molecular weight: 125268,88550 Da
isoelectric point:4,29699
aromaticity:0,08463
hydropathy:-0,22427

Domains

Domains [InterPro]
DC_0118
STR
1–754
DC_0118 DC_0808
NF040662
Unmapped
414–907
NF040662
AZU97917.1
1 1158
Architecture
STR
RBD
STR 1-754 | RBD 768-1033 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AZU97917.1
1 1158
Domain Start End Length (AA) Confidence
N-terminal 1 236 236 0,9482
Central domain 237 435 200 0,7433
C-terminal 436 1158 722 0,1303
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-236
Central
237-435
C-terminal
436-1158

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage LP.1
[NCBI] 		2500150 No lineage information
Host Vibrio maritimus
[NCBI] 		990268 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AZU97917.1 [NCBI]
Genbank nucleotide accession
MK249872 [NCBI]
CDS location
range 26497 -> 29973
strand -
CDS
ATGCCATACATTACCCATCAAAAAGATCCGGCCATGATCGCGCCGCCAGATTGCTATCAAGTACCTGACGGCACGCACCTCGTAACTTGGCTGCATGAAACGTTTGTTGACGCTGACGCTATGTGTGGCGATTTGGCTTGCGACATCATTATCAATGGCCGCGTCATATACCGCAACGACGATGACAACTACAACCCAAACGAGCTTGATTTTATCACGCTAAACGCTATGGATACGGTGAGTATTGTTAATCGTCCGGCGGGTATAGAAGTCGTTGCTATAGTTATCGCAGTTATATCCATCGCGGCCAGTGTTTACATGATGGCAACAATGAACACACCCCAGCTGCCTGGAGCCGGAACGCAAGCCAACGAATCACCCAACAACCGACTAAACGCAGCAACTAACGAATTTAGACCAAACCAAGCGATCCCAGAGTGTTTTGGGCGTGGCGTTTCGTATCCAGATTTTGCACAGCCAAGTTACTATTTTTATGAAAACAACGTACGCCGACAGGTCGAGCTATTCACGATCTCGGTTGGCACCGTTAACGTGCCAGAAATCCGCGTAGCCGAGACGGAAGTGAGTGAAATCCCCAACACTAGTGCGACGGTCTATCTACCTGGTCAAAGCGTGCCAAATGAATACCTAAACGTGCACCGTGGAGCATCAACTGTTAGCGAGGATGTGTTACAAGCCCCAAACGATGGTAACGTAATTAAAGGCAATGTTACTTTTGGCGTTATCGGAGGCAATCCAACAACAGATCTTACCTTCTCAGATAAAAATGTCATTTACGATTTAGCGCTATCGGCAGGCGGTTACATTTACTTGAGAAGCAGTGAATCGCTGTCTATCTATCCAACATCCGGCACGGCGCAAGTTAGTGATATATGCCCAGTTGGAACGCAGGCGCTGAGAAATGGCTCGGTATTTCACAGAACAAGCCAAGCAGTTGGCGGTGAAATCACAGCTTTAGACTTTGGCGCATTAACCGCCACAGTGGGCGGCGTATCTGTTACATTAGGCGCGGCAGAATCATCACTACCAACATTAAACGGTGTGCTTGAAATCACTAACGTTGATATTAACGCAACGCCAGCCGTCGTAACAGTTGACCATGTTAGCGCTATTAATGGCACTTACGTTGGTTCAGTTGGCCGTGGCTACTCTCAAGGCGTCATCGGCGAAGGCACAAACGGCGAGCTTGATACGTGGGTGGGATGGTTTGAAGTACCCGGCGACGAGATAGGTGAGGTTTGGATACACTGGAAAGCCCCGCAAGGCATCCGCAATTTGGACGGTGATGGCAATTCGATAAGTGCCAGTATCACGCTAGAAATGCAAATCGAGTCACTAGATAGCAACGGAGATCCGACAGGTAATATATGGACGCAAAACCCAGTATTGCAAGGCAATACACTTGACGCGCAATTCAGAACGACCATATTTACGCCGGAAGACTTCCCAGCCATGACACGCAGCGGCTATCGAGTGCGCACAAGGCGCATAACTAACGTGATCAGCGGGCAAGGTCGAGCGAGTGAACGTGTGCAGCTTGAGGGTTATGTTTCAGTCACGCCATACAGCAACCCAAACTTTGGCGACGTCACTATGTTGCTAATGCTGCGAAATGCGTCGCTATTTGGTGCTGACCAGGCGGGTAAAAAAATCAACTGCGACTATGAGCGACTGCTGCCAACGTATGATCGCAACACTGGCGTGTATGACCAAAACACACTAACCGCCACCGATAGCTTTGCCGATGCTGCGGCCTATACGCTAATCAAAGCGGGCGGCACACCAGAAAGCCGTGTCGATTTGTCTGGACTGTACGAAATTTACGACGGACTGAGCGATCCGCAGTTAGGCGGCTTCACCTTTACGTTTGATGACGAAAACGTATCAATGGGTGAGCGTATTGACGCTATTTGCGCCGTTGCCCGCGTTAGCTCGTTTGGTGAAAATGCGCTTTGGGAGTTCTCACGCGATGAGGCAAAACCCGTCCGTTCTGCGTTATTTAATAGACGCTCGTTGATTGATAACCAAGGCCAACAAACCTACATGCTGCAACGCTCGGACGATGCCGACAGCGTGATCGTTTACTATGTTGACCCTGACACCAACACAGAAAAAAGCATCAAACGACGTATTGATATAGAGAGTGCCGCGATCGTCAACGGAGAAACGGGCAGCGTACCGAAAGAGATTAGGTTAACAGGTTGTCGAAATTCATTTCAAGCAACCAACCGAGCCGATCTTGAGATTCGCCGCATTGCCTATCAGCGCCACACTATCCGCGACATTGCGCGCCGTGAAGCGTTGGAGGTTCGATTAACAGATCGTGTTGGGTGGGTGGACATCAACGACACGGACTATTTCGACGGCGAGATATTAGGCATTAACGGCAGTACGTACGACACAAGCGAGCGATTCGAGCCAATAGATGGCGAAACGTACTTTGTTTATATCACAGATAACGAAGGCTACCCGTCTAACTCTGTGCAGTGCTTCCCGCGTACGGATACAGAATTCGGCTTTATCGCCTCGGGTATATCTGGCGCATTTCTGCCTAACGGTGACGAGCAACTAGGATCGCGTTACTTTATCGCCAATGCAAGCAACCTATCGGCGCAAGACTTTACGCTCGTTAAACGTGCGCCAACGGGTGATCGCAAGGTAGAGATTGAGCTCGTCAGCTACGATTCGCGCATGTATGAAATGGATGACGTGACGCTGCCGGACGGCATTGCTTTCGTGCCAGTTGGGATTGTATCGACTGACTATCAGCAAACACCAAACGCAGCGCAAGCCACACTCACTTTTGAATCAGATGGTGATATTACATTCACAGGCGGCTCGTCAATCTGGCACAGCAACGCGCCAAATACTGGTATAGGTCAAGGCTATCAATTGAAGGTTTCACAGACATCAGGTGATACACCTAGTGCTGACTTTGCGCTCGATACGTGGGTTGATATGACGACAAGCCGAACCTTAACACTCGATCAGTCTGGCGTCGATGTGGCTGACGCTATCATGGAAGTACAGATCCGCGAGATAGCCGACCCTAGTAACATCGCTAGTGGTGAGGTTCGCTTAGTGTCCGCAGAGCTTGGGGCGTTGTCGCTTCCTGTATCTGTAACCGCAACAGTAGCCAACCAACCAAATGAGGCTACTTGTCGATTTGATCTAGAGTCAGATGGCACATGGACAGCTAACGACGGACAGGTGGGCGCTTATATTACTAGCGGCTACAATGTGGGCTCGCAATACGAAGCGCGCGCCACAAACCTTGCGGGTGACACTCCGGCGGGCTTGTTTGATGTTTGGGTAGCATTGGACGGCAGTGGTACGGAATGGACACTATACACCCAGGCAAGCGCGACAGCGACGTTTGATGTAGAGGTGCGCGAGATCGCTAACACTGCCAACACCAACACGTGCACTGTGACGTTGAATGCTGGTGTGGCGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
e967f4124494f836413a44587873b0f09c17f6d8e9cc328b8c2605998ea0b967
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2850
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation and Genetic Analysis of a Novel Vibrio Phage LP.1 from the the coastal water of Qingdao, China Han,Y. 2019-07-13 — GenBank