Protein

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Genbank accession
XGU02832.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MSDITANVVVSNPRPIFTESRSFKAVANGKIYIGQIDTDPVNPANQIPVYIENEDGSHVKIAQPLIINAAGKIVYNGQLVKIVTAQGHSMAIYDANGSQVDYIANVLKYDPDQYSIEADKKFKYSVKLSDYPTLQDAASAAVDGLLIDVDYHFYNGEKVDFGGKALTIDCKAKFIGDGNITFTNLGTGSLVKSPYMESATTPWMIFPWDEDGNWITDAESVVSTLAQTRDKGYQPTVNDYVKFPGIESLLPDYAKNQGINSTLRIFECTGVNVENASGSVACYLFVGCSYCKMIEPDSIFGGYYGVITFENLSGSKGIGNYCIGGRTNYGSVSSVQFLRQDGGNGHDGGVIGFTSYRPGESGVKTWQGTVGGTSSRCYNLQFRKSLSISTVWDGFDLGADIGNETDRPGDFPLDEYPVHQLPTNHLIDDLVSIGSLGVGIGMDGKGGYVSNILMQDCAGSGGLWYTYGKTFTNVFVIDTNTLNFNANQLYIQGDCIVNGLRLVGIKPTPSNGLIVDAPNTTISGITGNVDSSRVNAANIIDPMLGNAIINSYQDTGSLDIRLHKLSPSLDALSIKAHSNGSGSGSAWCSLGAASGSVSDVVSIKVNYTDNRAAEIPFSPIVVSDGAVKDNSCFVPYWEENSLKALVKKADGSLVRITIATV
Physico‐chemical
properties
protein length:661 AA
molecular weight: 70749,42610 Da
isoelectric point:4,79263
aromaticity:0,09380
hydropathy:-0,10363

Domains

Domains [InterPro]
IPR009093
ATT
1–113
IPR009093 IPR011050
IPR009093
ATT
1–100
IPR009093 IPR011050
IPR036730
ATT
2–110
IPR036730 IPR012332
G3DSA:2.170.14.10:FF:000001
Unmapped
2–110
G3DSA:2.170.14.10:FF:000001 IPR015331
IPR036730
ATT
7–109
IPR036730
XGU02832.1
1 661
Architecture
ATT
STR
ATT 1-113 | STR 114-661
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XGU02832.1
1 661
Domain Start End Length (AA) Confidence
N-terminal 1 121 121 0,9861
Central domain 122 551 431 0,9837
C-terminal 552 661 109 0,9011
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-121
Central
122-551
C-terminal
552-661

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage vB_ST415_1NRH
[NCBI] 		3236694 Viruses > unclassified bacterial viruses >
Host Salmonella typhimurium
[NCBI] 		90371 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XGU02832.1 [NCBI]
Genbank nucleotide accession
PP921804.1 [NCBI]
CDS location
range 25355 -> 27340
strand -
CDS
ATGTCAGATATCACTGCCAACGTAGTTGTTTCTAACCCTCGTCCAATCTTTACTGAATCCCGTTCGTTTAAAGCTGTTGCTAATGGGAAAATTTACATTGGTCAGATTGATACCGATCCGGTTAATCCTGCCAATCAGATACCCGTATACATTGAAAATGAGGATGGCTCTCACGTCAAGATTGCTCAGCCGCTAATTATCAACGCAGCCGGTAAAATCGTATACAACGGCCAACTGGTGAAAATTGTCACCGCTCAGGGTCATAGCATGGCTATCTATGATGCCAATGGTTCTCAGGTTGACTATATTGCTAACGTATTGAAGTACGATCCAGATCAATATTCAATAGAAGCTGATAAAAAATTTAAGTATTCAGTAAAATTATCAGATTATCCAACATTGCAGGATGCAGCATCTGCTGCGGTTGATGGCCTTCTTATCGATGTTGATTATCATTTTTATAATGGAGAGAAAGTTGATTTTGGTGGTAAGGCATTAACCATCGACTGTAAAGCAAAATTTATTGGTGATGGTAATATTACATTTACTAATCTTGGTACTGGTTCTTTAGTAAAGTCCCCATATATGGAAAGTGCTACAACACCATGGATGATTTTTCCATGGGATGAGGATGGCAACTGGATTACTGATGCCGAATCAGTTGTTTCAACGTTGGCACAAACCAGGGATAAGGGGTATCAACCAACCGTAAACGACTACGTCAAATTTCCTGGAATTGAATCACTTCTTCCTGACTATGCAAAGAATCAAGGGATAAATTCAACATTACGGATTTTTGAATGTACAGGAGTTAACGTAGAAAATGCGTCGGGGTCTGTAGCATGCTACCTTTTTGTTGGATGTAGTTATTGTAAAATGATTGAGCCAGATTCTATCTTTGGTGGTTATTATGGCGTAATAACTTTTGAGAATCTGTCAGGAAGCAAAGGGATTGGAAACTATTGTATTGGTGGCAGGACAAATTATGGATCAGTAAGCTCCGTGCAATTTCTTAGGCAAGATGGTGGAAATGGGCACGATGGTGGGGTTATAGGCTTTACTTCTTATCGACCTGGTGAGTCAGGTGTAAAAACGTGGCAAGGAACCGTGGGCGGGACTTCATCCAGATGCTATAATCTTCAGTTCCGTAAATCATTATCCATATCTACTGTATGGGATGGTTTTGACCTGGGCGCAGACATCGGCAATGAAACTGACAGACCAGGTGACTTCCCTTTAGATGAGTACCCAGTTCATCAATTACCAACCAATCATTTAATTGATGACCTTGTATCTATTGGTTCGCTAGGTGTTGGTATAGGAATGGATGGTAAAGGTGGCTATGTATCAAACATATTGATGCAGGATTGTGCAGGATCTGGTGGTCTGTGGTATACATATGGTAAAACATTCACCAATGTCTTTGTCATTGACACAAATACTCTTAACTTTAATGCCAATCAGTTATATATACAAGGTGATTGTATTGTTAATGGATTGCGTTTAGTTGGCATAAAACCAACGCCATCGAACGGATTGATAGTAGACGCACCCAACACCACCATATCTGGAATTACCGGAAACGTTGATAGCAGTAGAGTTAATGCCGCCAATATCATTGACCCAATGCTTGGAAACGCAATAATTAATAGCTATCAAGATACAGGATCTCTAGATATAAGACTGCACAAATTAAGCCCATCTTTGGACGCATTAAGTATTAAGGCGCATTCAAATGGTTCTGGTAGTGGGTCAGCATGGTGTTCTTTAGGTGCTGCGTCTGGAAGTGTTAGTGATGTCGTATCTATAAAAGTTAACTACACCGACAACAGGGCAGCAGAAATACCGTTCAGCCCAATCGTCGTTAGCGATGGTGCAGTAAAAGATAACTCTTGCTTCGTCCCATACTGGGAAGAAAACTCACTAAAAGCCCTTGTCAAGAAAGCTGATGGATCTTTAGTGAGGATTACAATAGCAACAGTTTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
78d43f3a5925638b05fd23005ec60ac5654fa20831de892dc5ab05415ae6b256
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6510
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete Genomic Characterization of phages against Salmonella spp. and Campylobacter spp. isolated in the United Kingdom Mutai,I.J., Gurusinghe,A., Wang,B., Clark,M. and Bhandare,S.G. 2021-12-15 — GenBank