Phage RBP Database

Genbank accession

WVH13998.1 [GenBank]

Protein name

hypothetical protein

RBP type

TSP

Evidence DepoScope

Probability 1,00

TSP

Evidence RBPdetect

Probability 0,91

TSP

Evidence RBPdetect2

Probability 1,00

Seq2Symm

C3 confidence 0,999

C3	0,999
C1	0,429
D3	0,008

Predicted homo-oligomer symmetry (Seq2Symm, per-class probabilities; C1 = monomer, C2 = dimer, C3 = trimer).

Protein sequence

MADITDYVNIDQLPPAENIFGNELLEVLQAGNNHRATVIQLSEPAFDRIGAISLNVKNFGAVGDGSTDDRAAIQAAVDAAAIENVPLIFPNGRYLISNRISLRSNSHIYANGDATIESSADYQSGVASLMYGSAKNNVKISGLKFDTSRGYYTGHIWLANCTDVTIDKCNFISDWSKSTGSIRYGTHINGGSDISITGSFFDGIARPIWVIGSGKRIRIDDNRLQNMRSFGIIFSESTLFWEGVRIRGNYIDGYGSQSSLIYIGALAGNSALTGYHTDLVVADNFGLGSDLPYVTDGDLRGNGDLFSLRAMENARVYGNYVLNGGDLGLVIEYSKNVTVSGNIAARNEISGIVLHKAENVTLVNNICYDNCLDRSGRATLLSERGGIRVMAGSLNAVIVGNRCYDTRASGKTQLWGIVVTTQDQGSVGQNTGRVYVGTNMLSGNRIGGVFWNPNLQLQPSLDFEIAVSGATPNEMWARNTVCRHTTVAQGLPFMSVVRAAGTAVTIDPAESGYDTVKLDDVSNITDLSKLAIQNSSGGVFFIGVSSVDYVNNTVKLSGAIPAPGIQAGATVFYTTWRTAVSYQ

Physico‐chemical properties

protein length:	583 AA
molecular weight:	62479,19130 Da
isoelectric point:	5,37176
aromaticity:	0,08576
hydropathy:	-0,04871

Domain architecture

WVH13998.1

1 583 aa

STR 45–479 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR012334
STR

IPR012334 IPR012334

IPR011050
STR

IPR011050 IPR007742 IPR006626

IPR051801
Unmapped

IPR051801 IPR006626 IPR011050

IPR024535
ENZ

IPR024535 IPR006626 IPR006626 IPR006626 IPR006626

IPR011050
STR

IPR011050 IPR022441

IPR006626
Unmapped

IPR006626

WVH13998.1

1583 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_0729
ATT

DC_0729 DC_2234

WVH13998.1

1583 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR012334	STR	IPR012334	45	288	Merged direct domain	Pectin lyase fold	Central	Low	Positional only	867 proteins / 867 hits
IPR011050	STR	IPR011050	46	288	Merged direct domain	Pectin lyase fold/virulence factor	Central	Low	Positional only	572 proteins / 572 hits
IPR051801	Unmapped	-	50	235	InterPro	Glycosyl_Hydrolase_28_Enzymes	-	-	-	-
IPR024535	ENZ	DC_0410	54	205	InterPro cluster	Rhamnogalacturonase A/B/Epimerase-like, pectate lyase domain	Central	High	Text match	420 proteins / 426 hits
IPR011050	STR	IPR011050	55	300	Merged direct domain	Pectin lyase fold/virulence factor	Central	Low	Positional only	572 proteins / 572 hits
IPR006626	Unmapped	-	161	190	InterPro	Parallel beta-helix repeat	-	-	-	-
IPR006626	Unmapped	-	214	236	InterPro	Parallel beta-helix repeat	-	-	-	-
IPR006626	Unmapped	-	241	269	InterPro	Parallel beta-helix repeat	-	-	-	-
IPR012334	STR	IPR012334	289	479	Merged direct domain	Pectin lyase fold	Central	Low	Positional only	867 proteins / 867 hits
IPR007742	CBM	DC_0096	298	370	InterPro cluster	Periplasmic copper-binding protein NosD-like, beta helix domain	C-terminal	High	Text match	28 proteins / 31 hits
IPR011050	STR	IPR011050	303	450	Merged direct domain	Pectin lyase fold/virulence factor	Central	Low	Positional only	572 proteins / 572 hits
IPR006626	Unmapped	-	311	333	InterPro	Parallel beta-helix repeat	-	-	-	-
IPR022441	Unmapped	-	328	370	InterPro	Parallel beta-helix repeat-2	-	-	-	-
IPR006626	Unmapped	-	334	356	InterPro	Parallel beta-helix repeat	-	-	-	-
IPR006626	Unmapped	-	357	391	InterPro	Parallel beta-helix repeat	-	-	-	-
IPR006626	Unmapped	-	393	421	InterPro	Parallel beta-helix repeat	-	-	-	-

Proteins with similar domain architecture

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout

WVH13998.1

1 583 aa

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	67	67	0,9786
Central domain	68	496	430	0,9919
C-terminal	497	583	86	0,6898

N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Phage

Alcaligenes phage CASP1 [NCBI] · taxon 3104531

Uroviricota Caudoviricetes Alcaligenes phage CASP1

Host

Alcaligenes faecalis [NCBI] · taxon 511

Pseudomonadota Betaproteobacteria Burkholderiales Alcaligenaceae Alcaligenes Alcaligenes faecalis

Genbank protein accession

WVH13998.1 [NCBI]

Genbank nucleotide accession

OR960973 [NCBI]

CDS location

range 45340 -> 47091
strand +

CDS

ATGGCTGATATTACAGATTACGTAAATATTGATCAGTTGCCGCCAGCTGAAAATATATTCGGAAACGAGCTTCTGGAGGTTTTGCAGGCAGGAAATAATCATAGGGCAACTGTGATCCAGCTGTCGGAGCCTGCTTTTGACAGGATTGGCGCTATTAGTCTGAACGTAAAGAACTTCGGCGCTGTTGGCGATGGCTCAACCGATGATAGAGCGGCAATCCAGGCCGCTGTGGACGCCGCCGCAATCGAAAACGTACCGCTTATTTTCCCTAATGGCAGGTATCTAATTTCAAATAGAATTTCACTTCGGAGTAATTCCCATATTTATGCGAATGGCGATGCCACGATAGAGTCTAGTGCGGATTACCAATCTGGCGTAGCCAGCCTAATGTATGGTAGCGCTAAAAATAACGTAAAGATTTCCGGGTTAAAATTCGACACTTCAAGAGGGTATTATACTGGCCATATCTGGTTAGCAAATTGCACTGATGTGACTATAGATAAGTGCAATTTTATATCAGACTGGTCTAAATCCACAGGGAGCATTCGTTACGGAACCCATATTAATGGTGGGAGTGATATTTCTATTACTGGTTCATTTTTTGATGGAATTGCTCGTCCTATTTGGGTGATTGGCTCAGGTAAAAGAATTCGCATTGATGATAACAGACTTCAGAATATGCGTAGCTTTGGGATTATATTTTCTGAATCAACTCTTTTTTGGGAAGGTGTTAGAATCCGAGGAAATTATATAGATGGTTACGGCTCGCAAAGCAGCTTAATATATATCGGCGCACTAGCTGGGAATAGCGCCCTGACAGGCTACCATACAGATTTAGTAGTTGCGGACAACTTCGGGCTTGGCTCAGATTTGCCTTATGTAACAGATGGCGATCTTCGCGGCAATGGCGATCTGTTTAGTCTGCGTGCTATGGAAAATGCGCGAGTGTATGGGAATTACGTCCTGAATGGCGGTGATCTTGGCTTGGTAATAGAATATTCTAAGAATGTCACCGTCTCTGGAAATATTGCTGCAAGGAATGAGATTTCCGGAATCGTACTGCACAAGGCTGAAAACGTAACTTTGGTAAATAATATTTGTTACGATAACTGTCTTGATCGTTCCGGAAGGGCGACTCTACTTTCGGAGCGCGGCGGAATACGAGTTATGGCCGGAAGTTTAAACGCCGTTATTGTCGGTAATAGATGCTACGACACAAGGGCGAGCGGAAAGACACAGCTATGGGGCATAGTAGTGACAACACAAGATCAGGGTTCTGTGGGGCAGAACACTGGCCGGGTTTATGTTGGAACAAACATGCTTTCTGGAAATAGGATTGGGGGGGTGTTTTGGAATCCAAATCTACAGTTACAGCCTAGCCTAGATTTTGAAATAGCTGTGTCCGGGGCAACGCCAAACGAAATGTGGGCAAGGAACACTGTCTGCCGTCACACTACTGTGGCTCAAGGCTTGCCGTTTATGTCAGTGGTTAGAGCGGCGGGCACTGCTGTGACTATAGATCCAGCCGAATCTGGTTATGATACTGTGAAGCTGGATGATGTTTCTAACATCACCGATCTATCTAAGCTGGCAATACAGAATTCATCCGGTGGAGTCTTCTTCATAGGTGTATCATCTGTTGATTATGTTAATAATACCGTTAAATTGTCTGGAGCTATACCAGCCCCAGGCATACAGGCTGGGGCAACGGTTTTTTATACAACATGGCGTACTGCTGTTTCTTATCAATAG

Protein

Domains

Tail Spike Domain Segmentation

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)