Protein

Experimentally validated
View in Explore
Genbank accession
YP_009781971.1 [GenBank]
Protein name
gpORF096
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,89
TSP
Evidence RBPdetect2
Probability 0,65
Seq2Symm
C3 confidence 0,842
C3 0,842
C1 0,044
C10-C17 0,000
Predicted homo-oligomer symmetry (Seq2Symm, per-class probabilities; C1 = monomer, C2 = dimer, C3 = trimer).
Protein sequence
MALNFTTITENNVIRDLTTQVNNIGEELTKERNIFDITDDLVYNFNKSQKIKLTDDKGLTKSYGNITALRDIKEPGYYYIGARTLATLLDRPDMESLDVVLHVVPLDTSSKVVQHLYTLSTNNNQIKMLYRFVSGNSSSEWQFIQGLPSNKNAVISGTNILDIASPGVYFVMGMTGGMPSGVSSGFLDLSVDANDNRLARLTDAETGKEYTSIKKPTGTYTAWKKEFEPKDMEKYLLSSIRDDGSASFPLLVYTSDSKTFQQAIIDHIDRTGQTTFTFYVQGGVSGSPMSNSCRGLFMSDTPNTSSLHGVYNAIGTDGRNVTGSVVGSNWTSPKTSPSHKELWTGAQSFLSTGTTKNLSDDISNYSYVEVYTTHKTTEKTKGNDNTGTICHKFYLDGSGTYVCSGTFVSGDRTDTKPPITEFYRVGVSFKGSTWTLVDSAVQNSKTQYVTRIIGINMP
Physico‐chemical
properties
protein length:458 AA
molecular weight: 50423,73790 Da
isoelectric point:6,01785
aromaticity:0,09607
hydropathy:-0,40087

Domains

View on InterPro
Domain architecture
YP_009781971.1
1 458 aa
RBD 337–458
ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped
Proteins with similar domain architecture

Tail Spike Domain Segmentation

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout
YP_009781971.1
1 458 aa
Domain Start End Length (AA) Confidence
N-terminal 1 320 320 0,4527
Central domain 321 447 128 0,0196
C-terminal 448 458 10 0,9952
N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Taxonomy

Phage
Staphylococcus phage A5W [NCBI] · taxon 516541
Uroviricota Caudoviricetes Herelleviridae Kayvirus Kayvirus G1
Host
Staphylococcus aureus [NCBI] · taxon 1280
Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus aureus

Coding sequence (CDS)

Genbank protein accession
YP_009781971.1 [NCBI]
Genbank nucleotide accession
NC_047728 [NCBI]
CDS location
range 84027 -> 85403
strand +
CDS
ATGGCATTAAATTTTACTACAATAACGGAAAACAATGTTATTAGAGACCTGACTACTCAGGTCAATAACATTGGAGAAGAATTAACAAAAGAAAGAAATATATTTGACATTACCGATGATTTAGTTTATAATTTTAATAAATCACAGAAAATTAAACTAACTGATGATAAAGGATTAACTAAATCTTATGGAAACATAACAGCCCTTAGAGATATAAAAGAACCTGGTTATTACTATATAGGTGCTAGAACATTAGCAACATTATTAGATAGACCTGATATGGAATCTCTTGATGTTGTTTTACATGTAGTACCTCTTGATACTTCTAGTAAGGTAGTTCAACATTTATATACACTATCTACTAACAATAACCAAATTAAAATGTTATATAGATTTGTCTCAGGAAACTCTAGTTCAGAATGGCAATTTATTCAAGGATTACCTAGTAATAAAAATGCTGTTATATCAGGAACTAATATTTTAGATATAGCTTCACCAGGTGTTTACTTTGTTATGGGAATGACAGGAGGAATGCCTAGTGGAGTAAGCTCCGGATTTTTAGACTTAAGTGTAGATGCTAATGATAATAGATTAGCTAGACTAACTGATGCTGAAACCGGTAAAGAATATACTAGCATTAAGAAACCTACAGGAACATACACAGCCTGGAAAAAAGAATTTGAGCCAAAAGATATGGAGAAATATCTACTAAGTAGTATTAGAGACGATGGTAGTGCATCATTCCCACTCCTAGTTTATACTAGTGATAGTAAAACATTTCAACAAGCTATTATAGACCATATAGATAGAACAGGTCAAACAACCTTTACTTTCTATGTTCAAGGCGGTGTATCCGGTTCCCCTATGTCGAATAGTTGTCGAGGGTTATTCATGTCAGACACACCTAATACTTCTAGTTTACATGGTGTTTACAATGCTATAGGTACAGATGGTAGAAATGTAACAGGTTCAGTGGTAGGTAGTAATTGGACTTCACCAAAAACATCCCCTTCTCATAAAGAATTATGGACAGGAGCACAATCATTCTTATCTACAGGAACTACTAAGAATTTATCAGATGATATTAGTAACTACTCTTATGTAGAAGTTTATACTACACATAAGACAACAGAGAAGACTAAAGGTAATGACAATACAGGAACTATATGTCATAAGTTTTATTTAGATGGTAGTGGAACTTACGTTTGTTCAGGTACATTTGTTTCCGGGGATAGAACCGATACAAAACCCCCTATCACGGAGTTTTATAGAGTAGGTGTATCTTTTAAAGGTTCTACATGGACTCTTGTAGATAGTGCAGTACAAAATAGTAAAACTCAATACGTTACAAGAATTATAGGTATTAATATGCCATAG

Genome Context

Tertiary structure

YP_009781971.1
1 / 4
Structure ID
Source
Method
Resolution
Oligomeric state

Experimental validation

Experimentally validated

A wet-lab result is recorded for this protein, or for its sequence: a solved structure, an experimental GO annotation, a UniProt ECO:0000269 assertion, or a GenBank /experiment= qualifier.

Tier Source Assay Claim Reference
Experimentally validated GenBank
YP_009781971.1
 experiment:proteomics:MS gpORF096 – experimental, virion proteome analysis —
Experimentally validated PDB
9EUF
 structure:EM — ECO:0000006
Experimentally validated PDB
9EUI
 structure:EM — ECO:0000006
Experimentally validated PDB
5M9F
 structure:X-ray — ECO:0000006
Validated by sequence identity GenBank
YP_009780102.1
 experiment:proteomics:MS hypothetical protein – ESI-MS/MS —
Validated by sequence identity GenBank
CCA65771.1
 experiment:proteomics:MS hypothetical protein – ESI-MS/MS —
Validated by sequence identity GenBank
ACB89089.1
 experiment:proteomics:MS gpORF096 – experimental, virion proteome analysis —
Validated by sequence identity UniProt
Q6Y7P9
 protein_existence:evidence_at_protein_level 1: Evidence at protein level —
Validated by sequence identity UniProt
A0A0U1WIJ9
 protein_existence:evidence_at_protein_level 1: Evidence at protein level —

Rows marked “Validated by sequence identity” come from a different entry carrying the same sequence — the experiment was not performed on this protein.

Literature

Title Authors Date PMID Source
Structural and functional characterization of polyvalent Staphyloccocal bacteriophage A5W Ulatowska,M.I., Weber-Dabrowska,B., Sadowy,E., Krzyszton-Russjan,J., Gorski,A. and Lobocka,M.B. 2012-01 — GenBank