Protein

View in Explore
Genbank accession
YP_009201436.1 [GenBank]
Protein name
hypothetical protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,88
Protein sequence
MSSINLPGGGQSLPQYIEEAPVNGLLYGRKDEEWEIIPEDSLTPFPLGITPNSFDAGTGDRDAAIALRDAHASSNPSWVAYYVNNPTSSIDLVYEDVSLGGTVAERQTYTGTQWISQRIVEGIPGPVGPSGEGSIPPFASIAERDSFFSTSGNKSLLKNGLPVFVQEFAGRASSYYWRGANDPVAYDPNKFSLAAVQSGSGDLYLANAHKISSSGQNIAVTNIIDNISFHPLWQTYDEGNTGIVRVRSAEVVAEYSDKSAQLSNPRWELAQMPNNRTLYSVVVDFVNAYGEVDVIVYKNSIEYYQTKIINVTPGEFDVLIEPPFDIRAQDVLEVELRNPNVDVVVWGNASTSVPWNKPTIRSFVDESVVIQPELDAVDTRVTALETNALVAGDNISELSNDAGYISDKDIIFQKSSNTDTNVLTLNATGSEGTIPLSATNETGALFEYSSTSDNFRPLEDKPMHINLRVSIDRSGGGSDPEIIAWVESAATDTTTASAFTQETSAFRMDDLQTDRSMFLIDTILNMNSSRYYRIRLRNLNGDDFSVDTFGPYTTSSGNTILAPAVEFMLSR
Physico‐chemical
properties
protein length:571 AA
molecular weight: 62354,10070 Da
isoelectric point:4,34218
aromaticity:0,09282
hydropathy:-0,27356

Domains

Domains [InterPro]
G3DSA:1.20.5.320
STR
10–44
G3DSA:1.20.5.320
DC_1057
STR
38–548
DC_1057
YP_009201436.1
1 571
Architecture
STR
STR 10-548 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009201436.1
1 571
Domain Start End Length (AA) Confidence
N-terminal 1 400 400 0,9831
Central domain 401 560 161 0,0249
C-terminal 561 571 10 0,9939
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-400
Central
401-560
C-terminal
561-571

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage ValKK3
[NCBI] 		1610855 Uroviricota > Caudoviricetes > Pantevenvirales > Schizotequatrovirus > Schizotequatrovirus valkk3
Host Vibrio alginolyticus NBRC 15630 = ATCC 17749
[NCBI] 		1219076 Bacteria > Proteobacteria > Gammaproteobacteria > Vibrionales > Vibrionaceae > Vibrio

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009201436.1 [NCBI]
Genbank nucleotide accession
NC_028829 [NCBI]
CDS location
range 204497 -> 206212
strand -
CDS
ATGAGTTCGATTAATTTACCCGGCGGTGGGCAATCACTACCACAATATATCGAAGAAGCCCCTGTAAACGGATTATTATACGGGCGAAAGGATGAAGAATGGGAAATAATCCCAGAGGATTCATTAACCCCATTCCCACTTGGGATTACTCCAAATTCATTTGACGCAGGTACAGGAGACAGAGACGCAGCAATAGCTCTAAGAGACGCTCATGCGTCATCAAACCCATCATGGGTTGCTTACTACGTCAATAACCCTACATCATCAATTGACCTCGTATATGAAGACGTTTCGCTCGGGGGTACAGTAGCAGAAAGACAAACATACACAGGAACGCAGTGGATTTCGCAGAGAATTGTCGAGGGAATACCGGGTCCAGTTGGCCCATCAGGCGAAGGTTCTATACCACCATTTGCGTCAATTGCAGAAAGAGACTCGTTCTTTTCTACTTCAGGGAATAAGTCGCTATTGAAAAATGGGCTACCTGTATTCGTACAAGAGTTCGCAGGTCGTGCAAGCTCATACTATTGGCGCGGCGCAAACGACCCAGTAGCATATGACCCAAACAAATTCTCGTTAGCGGCTGTACAGTCGGGAAGCGGTGACTTATATCTTGCAAATGCACACAAGATATCATCATCAGGTCAAAACATCGCAGTCACAAATATAATTGACAATATAAGCTTTCATCCATTATGGCAAACTTACGATGAAGGAAATACTGGTATAGTTAGAGTTCGTTCCGCAGAAGTAGTCGCTGAATATTCTGACAAGTCGGCACAACTGTCAAATCCACGTTGGGAACTCGCCCAGATGCCAAACAATCGCACGCTATACTCAGTCGTGGTTGATTTCGTCAACGCATATGGGGAAGTTGATGTAATCGTATATAAAAATTCAATAGAATATTACCAAACTAAGATTATAAATGTCACGCCGGGTGAATTTGATGTTCTAATAGAACCACCGTTTGACATAAGAGCACAGGACGTACTAGAAGTCGAATTGAGAAATCCGAATGTAGATGTTGTAGTTTGGGGTAACGCAAGTACATCAGTTCCATGGAACAAACCGACAATACGAAGTTTCGTAGATGAGTCAGTAGTAATTCAACCAGAATTAGACGCAGTGGACACTCGCGTGACTGCATTGGAAACGAACGCGTTAGTAGCAGGCGATAATATTTCTGAATTGAGTAATGACGCAGGGTACATATCTGACAAAGATATCATATTCCAAAAATCAAGTAACACTGATACTAACGTTCTTACATTGAATGCAACTGGTTCTGAAGGTACAATCCCACTTTCAGCAACAAATGAAACAGGGGCATTGTTTGAGTATTCATCGACATCCGACAACTTCAGACCGCTCGAAGATAAACCGATGCATATAAATCTAAGAGTTAGTATAGACCGTTCAGGTGGAGGTTCAGATCCTGAAATTATAGCGTGGGTTGAATCTGCGGCTACTGATACAACAACAGCATCAGCATTTACTCAAGAAACCTCAGCGTTCAGAATGGATGACCTTCAAACTGATCGTTCGATGTTTCTAATTGATACGATTCTGAATATGAACTCAAGTCGTTACTATCGCATTAGATTGCGTAATTTAAATGGTGATGATTTTTCAGTTGATACGTTTGGGCCTTATACAACAAGCTCAGGCAATACAATCTTAGCCCCTGCGGTTGAGTTTATGCTTAGTCGATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
c907af3d8933e79259535713c77ee602244ccb87ba9ccb6254e6b944e15f1042
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5882
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50