Protein

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Genbank accession
QIO01163.1 [GenBank]
Protein name
receptor-binding tail protein
RBP type
TSP
Evidence DepoScope
Probability 0,94
TSP
Evidence RBPdetect
Probability 0,87
Protein sequence
MSFFAGKFSDGKTVLSLNAANGGDINQHYSPNTNSIFHSDMPFVLVDGTYEAALGDAGNGYFVTQMPWDIINIKSNDPGRVILTAIEINGTHRGFLNGTQSQVGQFLSFFEDPPRAGAELGLTSAFAIGDSLAHGTYTYNGSLGHEESIARQGTGGTLAQASGFQIFRPGGVSAGEAISRAWSLMGFPTGVSSAPIDPNNQDYWDPNWTAPIGSAYRGHDHFYVCNSNIRGYVGKKKEIPSNTNLLYQSPAFPNWVYVCRGSTSNMAAQSPRAVYVQDWYNVTPTKVIWYVLNLRYSNGNMGVSGTPFTGSDILISPSNFTIKGVSLPNTGYKFINQNAFGNLGYRSDMEYIGNNAAYTGVFGDTTARCEFIGSSNGSLWSPVGYGGAASQISLYKFNAGKQWYVDTNTNSIGNEHGPVWSPSTVPLRLFPNNVASTYVGDDITPSYPGAGNYYQPLSTVWLGLPNAHSTIILTTEVIMGNINTAGQRISTYGGSAWQVQGRRQQSYTAGDAIFHQILTLPPGYLVPYHSTTAYSNTQTWASRPDEFAFRRNGYIYTVKNLGNGNVEFGVIIHAAEAAAIFLPRLRITVQRLT
Physico‐chemical
properties
protein length:593 AA
molecular weight: 64306,73170 Da
isoelectric point:6,63416
aromaticity:0,12648
hydropathy:-0,23659

Domains

Domains [InterPro]
IPR059609
RBD
1–593
IPR059609
QIO01163.1
1 593
Architecture
RBD
RBD 1-593
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QIO01163.1
1 593
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,7047
Central domain 11 209 200 0,8186
C-terminal 210 593 383 0,8492
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-209
C-terminal
210-593

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage gmork
[NCBI] 		2713300 Uroviricota > Caudoviricetes > Demerecviridae > Epseptimavirus > Epseptimavirus S147
Host Salmonella enteritidis
[NCBI] 		149539 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QIO01163.1 [NCBI]
Genbank nucleotide accession
MT074463 [NCBI]
CDS location
range 10565 -> 12346
strand +
CDS
ATGAGTTTTTTCGCAGGAAAATTTAGTGATGGTAAAACTGTATTATCTCTAAACGCTGCTAATGGTGGTGATATAAATCAGCACTACTCTCCAAATACTAATAGTATCTTCCACTCAGATATGCCATTTGTCCTAGTTGATGGGACTTACGAGGCTGCTCTAGGTGATGCAGGTAATGGGTATTTTGTTACTCAGATGCCTTGGGATATTATAAACATTAAATCCAATGATCCTGGTAGAGTTATATTAACTGCTATTGAGATAAACGGTACTCATCGTGGATTTCTGAATGGTACTCAATCTCAGGTTGGCCAGTTCTTATCATTCTTTGAAGACCCACCACGTGCTGGTGCTGAGTTAGGATTGACATCTGCTTTTGCTATTGGTGATAGTCTAGCACATGGTACATATACCTATAATGGCTCCTTAGGTCATGAGGAATCTATCGCGCGCCAAGGTACTGGTGGTACTTTGGCCCAAGCATCTGGATTCCAAATATTTAGACCTGGTGGTGTTTCAGCAGGTGAAGCGATCTCTAGGGCTTGGAGTCTCATGGGTTTTCCAACAGGAGTTTCTTCGGCCCCTATAGATCCCAATAACCAAGATTATTGGGATCCTAACTGGACAGCACCTATTGGCTCTGCATACAGAGGTCATGATCATTTTTACGTTTGTAACTCTAATATTAGAGGATATGTAGGTAAGAAAAAAGAAATACCTTCTAATACAAATTTGTTATACCAATCTCCTGCTTTCCCTAATTGGGTATATGTATGTAGGGGTTCTACGTCTAATATGGCCGCTCAGTCACCTAGAGCAGTATACGTCCAAGATTGGTATAATGTTACTCCTACTAAAGTCATTTGGTATGTATTAAACCTACGTTACTCAAATGGTAATATGGGGGTTTCGGGGACTCCATTTACTGGTTCTGATATTCTTATATCCCCTTCTAACTTTACTATTAAAGGGGTTAGTCTACCTAATACAGGGTATAAGTTTATTAACCAGAATGCCTTCGGGAATCTAGGTTATCGCTCCGATATGGAATATATTGGTAATAACGCCGCATACACTGGAGTTTTTGGTGATACAACTGCTCGGTGCGAGTTTATAGGTTCTAGTAATGGAAGTCTATGGTCACCTGTAGGTTATGGAGGTGCTGCGTCCCAGATTAGTCTGTATAAGTTTAACGCAGGTAAACAATGGTACGTAGATACTAATACTAACAGTATTGGTAATGAACATGGCCCTGTATGGAGTCCTAGTACTGTACCTCTTAGATTATTCCCCAATAACGTTGCTAGTACGTATGTAGGAGATGATATTACTCCTTCGTATCCTGGAGCTGGTAACTATTATCAACCATTATCAACTGTTTGGTTGGGTCTACCAAATGCTCATTCTACTATTATATTAACTACTGAAGTTATTATGGGTAATATTAATACTGCTGGACAGCGTATTAGTACTTATGGGGGTAGTGCCTGGCAGGTGCAAGGGAGAAGACAACAGAGTTATACTGCTGGTGATGCTATATTTCACCAAATACTTACATTACCTCCCGGATATTTAGTACCATATCATAGTACTACAGCATATAGTAACACGCAGACTTGGGCAAGTCGTCCAGATGAATTTGCGTTTCGTAGAAATGGGTATATTTATACTGTTAAAAACCTTGGTAATGGTAACGTTGAGTTTGGTGTTATTATACATGCAGCTGAAGCAGCAGCTATATTCTTACCAAGACTACGTATAACCGTGCAACGCCTGACCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
e8744dac179120f83c3824baec1bf81c92fad8031291903e10161db6bc2b3f38
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,2462
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
A New High-Throughput Screening Method for Phages: Enabling Crude Isolation and Fast Identification of Diverse Phages with Therapeutic Potential Olsen,N.S., Hendriksen,N.B., Hansen,L.H. and Kot,W. 2020 — GenBank