Protein

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Genbank accession
YP_919014.1 [GenBank]
Protein name
tail protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,50
Protein sequence
MALISQSVKNLKGGISQQPNILRFPEQGSEQINGWSSETEGLQKRPPFVFTKTIGDQNALGAKPLVHLINRDSAEQYYVVFTGQGVRVFDLNGKEYDVKGDLSYVKVENPRDDLRMVTVADYTFIVNRNMVVRPDTTPLYTLKENGDCLINIRGGMYGRTLAFTINNTKIAYEIAHGDAPEHSKQTDAQWLVKKLAGLARLNVAFKGWTFTEGPGYIHVIAPSNSQINSLSTEDGYADQLMNAVMHTSQSFSRLPVEAPNGYTVKIVGDTSKTSDMFYVQYDNMKKVWKEVAGWGVQKGLNGGTMPHALVRQADGSFQMQVLPWTQRTCGDMDTNPTPSIVDQKINDVFFFRNRLGFLAGENIVMSRTSKYFSLFPASVANLSDDDPIDVAVSHNRISILKYAVPFSEELLLWSDQAQFVLSAQGILSPKSVELNLTTEFDVSDRARPFGVGRGVYFASPRASYTSLNRYYAVQDVSSVKSAEDMSAHVPNYIPNGVFSIRGSSTENFISVLSSNAPSRIFLYKFLYLNEEIAQQSWSHWELGSNVTVLACDSIGSTMYLVLRNQSHTWMCRAHFTKNSIDFPDEPYRLYIDNKVKYVIPEGSYNDDTYATTVKPVDVYGMKYWTGKFYIVASDGLVSWFEPPRGGWPNGVPMLTMSGNREGETIYVGLAISFRYVFSKFLIKKTADDGSIATEDIGRLQLRRAWVNYEDSGAFTVEVENTSRLFSYDMAGARLGSNVLRAGGLNVGTGQFRFPVTGNAQLNEVRIISEHTTPLNVIGCGWEGNYLRRSSGI
Physico‐chemical
properties
protein length:792 AA
molecular weight: 88386,74510 Da
isoelectric point:6,35610
aromaticity:0,11237
hydropathy:-0,26692

Domains

Domains [InterPro]
IPR058003
TTP
1–792
IPR058003
YP_919014.1
1 792
Architecture
TTP
TTP 1-792
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_919014.1
1 792
Domain Start End Length (AA) Confidence
N-terminal 1 141 141 0,9929
Central domain 142 344 204 0,1208
C-terminal 345 792 447 0,2262
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-141
Central
142-344
C-terminal
345-792

Taxonomy

  Name Taxonomy ID Lineage
Phage Yersinia phage Berlin
[NCBI] 		369257 Uroviricota > Caudoviricetes > Autographivirales > Studiervirinae > Berlinvirus
Host Yersinia pestis
[NCBI] 		632 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_919014.1 [NCBI]
Genbank nucleotide accession
NC_008694 [NCBI]
CDS location
range 22093 -> 24471
strand +
CDS
ATGGCTCTTATTTCACAATCCGTCAAGAACCTGAAGGGCGGTATCAGTCAACAGCCGAACATCTTAAGGTTCCCCGAACAGGGTTCCGAGCAGATTAATGGTTGGTCCTCGGAGACTGAGGGTCTTCAGAAGCGTCCACCTTTTGTCTTCACTAAGACCATTGGAGACCAGAATGCCCTTGGTGCCAAACCTCTAGTTCACCTCATCAACCGTGATAGTGCCGAACAGTATTACGTAGTGTTTACCGGACAGGGTGTTCGTGTGTTCGATCTAAACGGTAAAGAGTATGATGTAAAGGGTGATTTGTCCTACGTTAAGGTAGAGAACCCTCGAGATGACTTAAGGATGGTCACTGTGGCTGACTACACATTTATCGTTAATCGCAATATGGTTGTGCGCCCAGATACTACCCCTTTGTATACCCTTAAGGAGAATGGAGACTGCTTGATTAACATCCGCGGGGGTATGTATGGTCGTACGTTGGCATTCACTATTAACAACACAAAGATTGCATACGAGATTGCCCATGGGGACGCACCAGAACATTCTAAGCAGACTGACGCACAGTGGCTCGTTAAGAAACTTGCTGGTCTCGCGCGTTTGAATGTTGCCTTTAAGGGCTGGACGTTCACCGAAGGGCCTGGGTACATCCATGTGATTGCTCCAAGTAACAGTCAGATTAACTCACTGTCCACTGAAGATGGCTACGCCGACCAGTTGATGAACGCAGTGATGCACACCAGCCAGTCATTCAGTAGGTTGCCCGTTGAGGCTCCTAATGGATACACAGTGAAGATTGTTGGGGACACCTCTAAGACATCCGATATGTTCTACGTTCAGTACGACAATATGAAGAAGGTATGGAAAGAGGTTGCTGGTTGGGGAGTACAGAAGGGACTTAATGGAGGCACGATGCCTCATGCTCTGGTACGTCAGGCTGATGGGTCATTCCAGATGCAAGTCCTACCGTGGACACAACGTACCTGTGGTGACATGGACACTAACCCTACGCCGTCTATTGTTGACCAGAAGATTAACGATGTGTTCTTCTTCCGTAACCGCTTAGGGTTCCTCGCTGGTGAGAACATTGTGATGTCCCGTACCTCTAAGTATTTTTCATTGTTCCCTGCATCAGTAGCTAACCTGTCCGACGATGACCCTATCGACGTGGCTGTGTCTCATAACCGAATCTCTATCCTGAAGTACGCCGTACCGTTCTCTGAGGAGTTGCTCCTATGGTCAGACCAAGCACAGTTCGTGTTGTCTGCTCAAGGTATCCTCTCACCTAAGTCAGTAGAGTTGAACCTCACGACCGAGTTCGATGTGTCAGACCGAGCGAGACCTTTTGGCGTTGGGCGCGGTGTGTACTTTGCGTCACCTCGTGCTTCCTATACGTCACTTAACCGTTATTATGCGGTACAGGATGTTAGCTCTGTGAAGTCTGCTGAGGATATGAGTGCTCACGTTCCTAACTACATTCCGAACGGTGTGTTCTCTATACGAGGCTCCAGCACTGAGAACTTCATCTCTGTGTTGTCTTCAAATGCTCCAAGCAGAATCTTCCTCTATAAGTTCCTCTACTTGAACGAAGAGATAGCACAACAGTCGTGGTCACATTGGGAACTAGGAAGTAACGTTACCGTACTGGCCTGTGACTCTATTGGTTCCACCATGTACCTTGTGTTGCGCAATCAGTCACACACTTGGATGTGTCGTGCTCACTTTACGAAGAACAGCATCGACTTCCCTGATGAGCCGTATCGTCTGTACATTGACAATAAGGTGAAGTATGTGATTCCTGAAGGTTCATACAATGATGACACTTACGCTACCACTGTGAAACCTGTAGACGTCTATGGGATGAAATACTGGACCGGTAAGTTCTACATTGTGGCCTCTGATGGACTGGTGTCATGGTTCGAGCCTCCTCGTGGTGGTTGGCCTAATGGTGTACCTATGTTAACAATGAGTGGGAACCGTGAGGGTGAGACAATCTACGTTGGGTTGGCTATCAGCTTCCGCTATGTGTTCTCTAAGTTCCTCATTAAGAAGACCGCTGATGATGGCTCTATAGCTACCGAGGACATTGGTCGTTTACAGTTACGCCGAGCATGGGTGAACTACGAGGACTCTGGTGCATTCACAGTGGAAGTGGAGAACACCTCTCGACTGTTCAGCTATGATATGGCAGGTGCTCGCTTGGGTTCCAATGTGTTACGTGCTGGTGGACTTAATGTTGGTACGGGTCAGTTCCGCTTCCCGGTGACTGGTAATGCACAGTTGAATGAAGTACGTATTATCTCTGAACACACCACACCACTGAACGTTATCGGTTGTGGTTGGGAGGGTAACTACCTTCGTCGTTCTTCTGGTATCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
84e8b208d8fc66e2e500b34b93991ca1da4c86c2844432c30af3922aeb3dcb99
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,9043
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Sequence of bacteriophage Berlin Rakin,A. 1995-06-15 — GenBank