Phage RBP Database

Genbank accession

QVW08373.1 [GenBank]

Protein name

tail fiber protein

RBP type

TF

Evidence Phold

Probability 1,00

TSP

Evidence RBPdetect

Probability 0,91

TF

Evidence RBPdetect2

Probability 0,56

Protein sequence

MANWSNITPENSNEKDDEFIIRHQGINYLQKRDVVAASMSNARWLAEGNYLAGSEVKGSDNIWYTAVVNTGSDYGNSTNPVTKVDDSVWVQKVYEVTPLNDDWNGFFTRNHITQLPSPAGIPATSGSGGTVYGADDEWSIGNFTTGGVISLDNDGLVFSQGIYKLFTFTVEQLSLIDVTKVPVYIVGQDGSRHFVKHNGTGVVVTKPDTTTLKVQVNNAILAELGITKVFSFFVTATVGFVQEKGDLALPSSLGFFEIEGLPQENGFIITNMTLGGNRVIIQNVTFGPITNGGSATVPWITPFPNAVFNCVASPLGLGANAASSSMATGNPTVNGVNVYNWGTIQAKVRIFAIGY

Physico‐chemical properties

protein length:	355 AA
molecular weight:	38096,20540 Da
isoelectric point:	4,83196
aromaticity:	0,10423
hydropathy:	-0,01577

Domain architecture

QVW08373.1

1 355 aa

RBD 262–355

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

G3DSA:2.60.40.3940
RBD

G3DSA:2.60.40.3940

QVW08373.1

1355 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_0226
STR

DC_0226

QVW08373.1

1355 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
G3DSA:2.60.40.3940	RBD	G3DSA:2.60.40.3940	262	355	Merged direct domain	G3DSA:2.60.40.3940	C-terminal	Low	Positional only	77 proteins / 77 hits

Proteins with similar domain architecture

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout

QVW08373.1

1 355 aa

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	133	133	0,9656
Central domain	134	332	200	0,1050
C-terminal	333	355	22	0,9986

N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Phage

Vibrio phage ICP1 [NCBI] · taxon 979525

Viruses Duplodnaviria Heunggongvirae Uroviricota Caudoviricetes

Host

Vibrio cholerae O1 [NCBI] · taxon 127906

Bacteria Proteobacteria Gammaproteobacteria Vibrionales Vibrionaceae Vibrio

Genbank protein accession

QVW08373.1 [NCBI]

Genbank nucleotide accession

MW794191.1 [NCBI]

CDS location

range 32002 -> 33069
strand -

CDS

ATGGCAAACTGGTCAAATATTACACCAGAGAATAGTAATGAAAAAGATGATGAGTTTATTATTCGTCACCAAGGTATCAACTACTTACAGAAACGAGATGTAGTTGCTGCTAGTATGAGCAATGCACGTTGGCTTGCTGAAGGTAACTATTTAGCTGGAAGTGAAGTAAAGGGTAGTGATAATATTTGGTATACTGCGGTCGTAAACACAGGTAGTGATTACGGGAACAGTACCAACCCTGTAACTAAGGTTGATGATTCGGTATGGGTACAAAAAGTATATGAAGTCACCCCCCTAAACGATGACTGGAACGGTTTCTTCACAAGAAACCACATAACTCAACTACCATCACCTGCAGGAATACCAGCTACCAGTGGTTCTGGGGGTACTGTATATGGTGCTGATGACGAGTGGTCTATTGGAAACTTCACCACAGGTGGGGTTATTTCGCTTGATAATGATGGTCTTGTATTTTCTCAAGGAATCTACAAACTATTCACGTTCACTGTTGAGCAGTTGTCCCTTATTGATGTCACCAAAGTTCCGGTCTATATCGTTGGTCAAGATGGTTCGCGGCACTTTGTTAAACACAACGGAACGGGTGTGGTTGTCACAAAGCCAGATACCACAACTCTAAAAGTGCAGGTTAACAATGCAATTCTTGCCGAGCTTGGTATTACGAAAGTGTTTAGTTTTTTTGTGACTGCTACGGTTGGTTTCGTTCAAGAAAAAGGTGATCTTGCTCTACCGTCTTCGCTTGGATTTTTTGAGATCGAGGGTCTTCCTCAAGAAAACGGCTTTATCATCACAAATATGACTCTTGGGGGGAATAGGGTAATCATACAAAACGTAACCTTCGGACCAATTACCAATGGGGGTAGTGCAACTGTACCATGGATTACCCCGTTCCCTAATGCGGTTTTCAACTGCGTAGCTTCACCACTAGGTCTGGGAGCAAACGCGGCCTCTTCGTCGATGGCCACAGGTAACCCTACTGTTAATGGAGTTAACGTATACAACTGGGGTACAATACAAGCTAAAGTAAGAATATTTGCGATAGGTTATTAA

Protein

Domains

Tail Spike Domain Segmentation

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)