Phage RBP Database

Genbank accession

XFC52480.1 [GenBank]

Protein name

tail assembly protein

RBP type

TF

Evidence RBPdetect

Probability 0,82

TF

Evidence RBPdetect2

Probability 0,96

Seq2Symm

C1 confidence 0,857

C1	0,857
C3	0,143
C2	0,001

Predicted homo-oligomer symmetry (Seq2Symm, per-class probabilities; C1 = monomer, C2 = dimer, C3 = trimer).

Protein sequence

MAQVVVAQRMWQRRDTAANWQSKNPVLAAGEIGVQLGANSDETKFKIGDGVTPWNSVKFFEGRLIELGTGGGYIRWRYVGDATWTNLVSLESLRGPAGSTGATGANGLSAYQVAVANGFAGTQQQWLASLKGDKGDQGIQGPPGIPSQRRIQRIADTTSGSVICDWNAYDEIRITLTTNTQINMTGALPGQGCVLLLKQDSAGSHAVTFSNNVRFNNLIKTYAPTPTPGKSDRLGFVYDDDDDYYDVQAVVDGI

Physico‐chemical properties

protein length:	254 AA
molecular weight:	27294,10080 Da
isoelectric point:	5,44707
aromaticity:	0,08661
hydropathy:	-0,32008

Domain architecture

XFC52480.1

1 254 aa

ATT 9–52 · STR 53–141 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

SSF69349
STR

SSF69349

IPR041352
ATT

IPR041352

XFC52480.1

1254 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_1473
STR

DC_1473

XFC52480.1

1254 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
SSF69349	STR	SSF69349	9	141	Merged direct domain	SSF69349	Central	Low	Positional only	153 proteins / 153 hits
IPR041352	ATT	DC_0533	13	52	InterPro cluster	Major tropism determinant, N-terminal domain	Central	Medium	Text match	295 proteins / 296 hits

Proteins with similar domain architecture

Phage

Stenotrophomonas phage vB_SmaS_BCU1 [NCBI] · taxon 3240401

Uroviricota Caudoviricetes Casjensviridae Sanovirus Stenotrophomonas phage vB_SmaS_BCU1

Host

Stenotrophomonas maltophilia [NCBI] · taxon 40324

Pseudomonadota Gammaproteobacteria Lysobacterales Lysobacteraceae Stenotrophomonas Stenotrophomonas maltophilia

Genbank protein accession

XFC52480.1 [NCBI]

Genbank nucleotide accession

PQ111865 [NCBI]

CDS location

range 36203 -> 36967
strand +

CDS

ATGGCCCAGGTAGTTGTTGCCCAACGCATGTGGCAGCGCCGCGACACTGCGGCGAACTGGCAGTCGAAGAACCCGGTCCTCGCGGCCGGGGAAATCGGCGTGCAGCTCGGTGCCAATTCGGACGAGACCAAGTTCAAGATCGGCGATGGCGTCACCCCCTGGAACAGCGTCAAGTTTTTCGAGGGTCGGCTCATCGAGCTGGGCACGGGCGGCGGCTACATCCGGTGGCGGTACGTCGGCGACGCCACGTGGACGAACCTCGTGTCGCTGGAATCGCTACGCGGCCCGGCTGGCTCCACGGGTGCCACGGGTGCGAACGGCCTCAGCGCGTATCAGGTGGCAGTGGCGAACGGATTCGCCGGTACGCAGCAGCAGTGGTTGGCTTCGTTGAAAGGGGATAAAGGCGACCAGGGCATTCAAGGCCCGCCGGGCATCCCGTCGCAGCGTCGTATCCAGCGGATCGCGGACACCACCAGCGGGTCGGTCATCTGCGACTGGAATGCTTACGACGAAATCAGGATCACGCTCACCACCAACACGCAGATCAACATGACCGGCGCTCTCCCGGGCCAGGGGTGCGTGCTGCTGCTGAAGCAAGACTCCGCTGGATCGCATGCGGTGACCTTCAGCAACAACGTGCGGTTCAACAACCTCATCAAGACGTACGCCCCGACGCCGACACCCGGCAAGTCAGACCGGCTCGGCTTCGTGTACGACGATGATGACGACTATTACGACGTGCAAGCCGTGGTCGACGGGATTTAA

Protein

Domains

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)