Protein

View in Explore
Genbank accession
YP_010658053.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,94
Protein sequence
MSATITSADAVLTTLTVQGTGGTPGGLVGIYIDNVLRSERDVPDSSGNWEIVVTNLTGGNHTVRCTDIITTGTSVVTQFVPSSVTVAASDGNTTEDLTPVVGGTILDAEDNPIANATVTVYYKARASSTYTAAGATTSNSSGVYSLEIKTPLPDGEYDFYAVVTGASFTSDVASVEVSKPLEAPVMEPVEDKLFAIAADSIFVGINPPSGYELFTAKTMNIAKPLGEWSIGGSALGITIDSTTGTATITTPAQFAAAGSRQISVTCTNSEGSDTSLVNIVVVADNSTIKYVDSVGGLDTNTGNNPNVPLQTNNSSSNNTRRFKRGGTYNFQLNGADNQTREDYGDPWKPRPKLGSGQSYGYNGANQDYVTLRSLNFDGFTSRGIYIQVVTNTIIEDCLISNSGSSNLQGTKLHNSDKAAALTVPDLPGRLFNLIYRNNEVKNVKGDGLYITKINGILIENNKHDAAYGGGADCIQIAYENSSTNVSRDVMIRGNLLLQQPLSQSDKGGLVCEQTLRYVAEYNDIGGKNFSFSSIGFDAVCRSNNMRDGKLNTYSFGYGTGEQSHFGRHHVYDNFITNCIRGVGLSSFGDSTILNNGVYGYQRYDMEFHDNVISKCTYGFFADRPWSGYFKRNILMQCTNGITRQGGTVSGNTVANMGVYTTQDVTGNYTNDGTWLNSAAPVLTGSIIAGGTVSVAGAVWKLNGVVTVPDEVFYVWRNKGYDIAGAAGDSYTIPVDAASDFELSCVMFARKGTNWMLAVAENDWPTSAYFIPRAYTEGALGWRKRYFKLGDVA
Physico‐chemical
properties
protein length:792 AA
molecular weight: 84669,89330 Da
isoelectric point:4,91489
aromaticity:0,09470
hydropathy:-0,20770

Domains

Domains [InterPro]
DC_2112
ATT
1–100
DC_2112 IPR008969 IPR012334 IPR006626 IPR006626 DC_1753
IPR006626
Unmapped
7–34
IPR006626 DC_0928 IPR011050
G3DSA:2.60.40.1120
STR
101–185
G3DSA:2.60.40.1120 IPR006626 IPR006626 IPR006626
YP_010658053.1
1 792
Architecture
ATT
STR
RBD
ATT 1-225 | STR 278-688 | RBD 700-792
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010658053.1
1 792
Domain Start End Length (AA) Confidence
N-terminal 1 187 187 0,7962
Central domain 188 686 500 0,9115
C-terminal 687 792 105 0,5508
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-187
Central
188-686
C-terminal
687-792

Taxonomy

  Name Taxonomy ID Lineage
Phage Rhizobium phage RHph_Y38
[NCBI] 		2509781 Uroviricota > Caudoviricetes > Schitoviridae > Acanvirus > Acanvirus Y38
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010658053.1 [NCBI]
Genbank nucleotide accession
NC_070853.1 [NCBI]
CDS location
range 16529 -> 18907
strand +
CDS
ATGTCCGCAACAATCACAAGTGCTGATGCAGTACTTACAACGCTCACTGTTCAAGGTACTGGTGGTACCCCAGGTGGACTCGTAGGTATCTATATTGATAACGTCCTCAGATCAGAAAGAGATGTCCCAGATTCCAGCGGTAACTGGGAAATCGTTGTTACCAACCTGACTGGTGGTAATCACACAGTACGATGCACAGACATCATCACCACTGGAACCAGTGTGGTTACACAGTTCGTTCCGTCTTCTGTCACGGTTGCTGCTTCTGACGGTAATACGACAGAGGATCTTACCCCTGTGGTTGGTGGTACGATTCTGGATGCAGAAGACAATCCCATCGCCAATGCGACTGTGACGGTCTATTACAAGGCTCGTGCGTCTTCGACCTATACTGCTGCTGGAGCTACCACTTCAAACTCCTCGGGTGTCTATAGCCTTGAAATCAAAACCCCTCTTCCAGATGGTGAATATGATTTCTATGCTGTAGTAACCGGTGCTTCCTTCACTTCTGATGTTGCATCTGTTGAAGTTAGTAAGCCTCTTGAGGCTCCTGTCATGGAACCAGTAGAGGATAAACTCTTCGCTATTGCAGCGGATAGTATCTTTGTCGGTATTAATCCTCCATCTGGTTATGAGCTTTTCACCGCCAAGACTATGAACATTGCCAAGCCTCTTGGCGAATGGTCCATTGGTGGTTCTGCTCTCGGTATTACGATTGATTCGACTACCGGTACCGCAACCATCACAACACCTGCTCAGTTTGCTGCTGCTGGTTCTCGTCAGATCTCTGTCACCTGCACGAACTCTGAAGGCAGTGATACGTCATTGGTCAACATCGTTGTTGTCGCTGACAACAGCACAATCAAGTACGTAGATTCTGTAGGTGGTTTGGATACCAATACTGGTAACAACCCCAACGTACCCCTGCAAACAAACAACTCTAGTTCCAATAATACCCGTCGCTTCAAGCGTGGTGGGACGTATAACTTCCAGCTTAACGGTGCTGATAACCAGACTCGTGAAGACTATGGCGATCCTTGGAAACCTCGTCCTAAGCTTGGTTCAGGACAGTCCTATGGTTACAATGGAGCCAACCAGGATTATGTAACTCTTCGTTCTCTTAATTTTGATGGCTTTACTTCTCGTGGTATTTATATCCAGGTCGTAACCAATACAATTATCGAAGATTGCCTAATTTCCAATAGTGGATCCAGCAACCTTCAGGGAACCAAGCTTCACAATTCTGATAAAGCTGCTGCTCTTACTGTACCGGATCTTCCCGGTCGGTTGTTTAATCTGATCTATCGTAATAACGAAGTGAAGAACGTCAAAGGCGACGGTCTCTATATTACGAAGATCAATGGTATTCTTATCGAGAATAACAAGCACGATGCTGCTTATGGCGGCGGTGCTGACTGCATCCAGATCGCTTATGAGAACAGTTCCACGAACGTCAGTAGAGACGTTATGATTCGTGGTAACCTACTCTTGCAGCAACCACTGTCCCAGTCTGACAAGGGCGGTCTAGTCTGCGAACAGACCCTTCGATATGTTGCAGAATACAATGACATTGGTGGTAAGAACTTCTCGTTCTCCTCCATTGGATTTGATGCTGTCTGCCGATCCAACAACATGAGAGACGGCAAGCTCAATACCTATTCCTTCGGGTATGGTACTGGTGAGCAGTCTCACTTTGGTAGGCACCATGTTTACGATAACTTCATCACCAACTGTATTCGTGGTGTTGGTCTCTCCAGCTTTGGTGATTCCACCATCCTGAACAACGGTGTATATGGTTATCAACGTTATGACATGGAGTTCCATGATAACGTCATCTCCAAGTGCACCTATGGGTTCTTTGCTGACCGTCCATGGTCTGGTTACTTCAAGCGTAACATCCTGATGCAGTGCACCAACGGTATCACTCGTCAAGGCGGTACTGTCAGTGGTAACACTGTTGCCAATATGGGTGTGTACACGACCCAGGATGTAACCGGTAACTATACCAACGATGGTACTTGGCTCAATTCTGCTGCCCCAGTTCTCACTGGCAGTATCATTGCAGGCGGTACTGTCTCGGTAGCTGGTGCTGTCTGGAAGCTTAACGGTGTCGTCACTGTACCGGATGAAGTCTTCTACGTATGGCGTAACAAGGGTTACGACATTGCAGGTGCTGCTGGTGACTCGTACACCATCCCTGTAGATGCTGCTTCCGATTTCGAACTGTCTTGCGTCATGTTTGCCCGTAAGGGAACCAACTGGATGCTTGCTGTTGCTGAAAACGATTGGCCTACAAGTGCCTACTTCATCCCAAGAGCATATACTGAAGGTGCTCTGGGTTGGAGGAAGCGTTACTTCAAGCTGGGCGATGTAGCATAG

Genome Context

Genome Context

Tertiary structure

PDB ID
348cfc971c6fe256bc8e37f82d76aa9afe2a01e8a5f09d3869ca85ed447a13a9
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2835
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Patterns of diversity and host range of bacteriophage communities associated with bean-nodulatin bacteria Vann Cauwenberghe,J., Santamaria,R.I., Bustos,P., Juarez,S. and Gonzalez,V. 1998-01 — GenBank