Protein

View in Explore
Genbank accession
YP_010658053.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,90
Protein sequence
MSATITSADAVLTTLTVQGTGGTPGGLVGIYIDNVLRSERDVPDSSGNWEIVVTNLTGGNHTVRCTDIITTGTSVVTQFVPSSVTVAASDGNTTEDLTPVVGGTILDAEDNPIANATVTVYYKARASSTYTAAGATTSNSSGVYSLEIKTPLPDGEYDFYAVVTGASFTSDVASVEVSKPLEAPVMEPVEDKLFAIAADSIFVGINPPSGYELFTAKTMNIAKPLGEWSIGGSALGITIDSTTGTATITTPAQFAAAGSRQISVTCTNSEGSDTSLVNIVVVADNSTIKYVDSVGGLDTNTGNNPNVPLQTNNSSSNNTRRFKRGGTYNFQLNGADNQTREDYGDPWKPRPKLGSGQSYGYNGANQDYVTLRSLNFDGFTSRGIYIQVVTNTIIEDCLISNSGSSNLQGTKLHNSDKAAALTVPDLPGRLFNLIYRNNEVKNVKGDGLYITKINGILIENNKHDAAYGGGADCIQIAYENSSTNVSRDVMIRGNLLLQQPLSQSDKGGLVCEQTLRYVAEYNDIGGKNFSFSSIGFDAVCRSNNMRDGKLNTYSFGYGTGEQSHFGRHHVYDNFITNCIRGVGLSSFGDSTILNNGVYGYQRYDMEFHDNVISKCTYGFFADRPWSGYFKRNILMQCTNGITRQGGTVSGNTVANMGVYTTQDVTGNYTNDGTWLNSAAPVLTGSIIAGGTVSVAGAVWKLNGVVTVPDEVFYVWRNKGYDIAGAAGDSYTIPVDAASDFELSCVMFARKGTNWMLAVAENDWPTSAYFIPRAYTEGALGWRKRYFKLGDVA
Physico‐chemical
properties
protein length:792 AA
molecular weight: 84669,89330 Da
isoelectric point:4,91489
aromaticity:0,09470
hydropathy:-0,20770

Domains

View on InterPro
Domain architecture
YP_010658053.1
1 792 aa
ATT 101–178 · STR 278–688 ·
ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped
Proteins with similar domain architecture

Tail Spike Domain Segmentation

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout
YP_010658053.1
1 792 aa
Domain Start End Length (AA) Confidence
N-terminal 1 187 187 0,7962
Central domain 188 686 500 0,9115
C-terminal 687 792 105 0,5508
N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Taxonomy

Phage
Rhizobium phage RHph_Y38 [NCBI] · taxon 2509781
Uroviricota Caudoviricetes Schitoviridae Acanvirus Acanvirus Y38
Host No host information

Coding sequence (CDS)

Genbank protein accession
YP_010658053.1 [NCBI]
Genbank nucleotide accession
NC_070853.1 [NCBI]
CDS location
range 16529 -> 18907
strand +
CDS
ATGTCCGCAACAATCACAAGTGCTGATGCAGTACTTACAACGCTCACTGTTCAAGGTACTGGTGGTACCCCAGGTGGACTCGTAGGTATCTATATTGATAACGTCCTCAGATCAGAAAGAGATGTCCCAGATTCCAGCGGTAACTGGGAAATCGTTGTTACCAACCTGACTGGTGGTAATCACACAGTACGATGCACAGACATCATCACCACTGGAACCAGTGTGGTTACACAGTTCGTTCCGTCTTCTGTCACGGTTGCTGCTTCTGACGGTAATACGACAGAGGATCTTACCCCTGTGGTTGGTGGTACGATTCTGGATGCAGAAGACAATCCCATCGCCAATGCGACTGTGACGGTCTATTACAAGGCTCGTGCGTCTTCGACCTATACTGCTGCTGGAGCTACCACTTCAAACTCCTCGGGTGTCTATAGCCTTGAAATCAAAACCCCTCTTCCAGATGGTGAATATGATTTCTATGCTGTAGTAACCGGTGCTTCCTTCACTTCTGATGTTGCATCTGTTGAAGTTAGTAAGCCTCTTGAGGCTCCTGTCATGGAACCAGTAGAGGATAAACTCTTCGCTATTGCAGCGGATAGTATCTTTGTCGGTATTAATCCTCCATCTGGTTATGAGCTTTTCACCGCCAAGACTATGAACATTGCCAAGCCTCTTGGCGAATGGTCCATTGGTGGTTCTGCTCTCGGTATTACGATTGATTCGACTACCGGTACCGCAACCATCACAACACCTGCTCAGTTTGCTGCTGCTGGTTCTCGTCAGATCTCTGTCACCTGCACGAACTCTGAAGGCAGTGATACGTCATTGGTCAACATCGTTGTTGTCGCTGACAACAGCACAATCAAGTACGTAGATTCTGTAGGTGGTTTGGATACCAATACTGGTAACAACCCCAACGTACCCCTGCAAACAAACAACTCTAGTTCCAATAATACCCGTCGCTTCAAGCGTGGTGGGACGTATAACTTCCAGCTTAACGGTGCTGATAACCAGACTCGTGAAGACTATGGCGATCCTTGGAAACCTCGTCCTAAGCTTGGTTCAGGACAGTCCTATGGTTACAATGGAGCCAACCAGGATTATGTAACTCTTCGTTCTCTTAATTTTGATGGCTTTACTTCTCGTGGTATTTATATCCAGGTCGTAACCAATACAATTATCGAAGATTGCCTAATTTCCAATAGTGGATCCAGCAACCTTCAGGGAACCAAGCTTCACAATTCTGATAAAGCTGCTGCTCTTACTGTACCGGATCTTCCCGGTCGGTTGTTTAATCTGATCTATCGTAATAACGAAGTGAAGAACGTCAAAGGCGACGGTCTCTATATTACGAAGATCAATGGTATTCTTATCGAGAATAACAAGCACGATGCTGCTTATGGCGGCGGTGCTGACTGCATCCAGATCGCTTATGAGAACAGTTCCACGAACGTCAGTAGAGACGTTATGATTCGTGGTAACCTACTCTTGCAGCAACCACTGTCCCAGTCTGACAAGGGCGGTCTAGTCTGCGAACAGACCCTTCGATATGTTGCAGAATACAATGACATTGGTGGTAAGAACTTCTCGTTCTCCTCCATTGGATTTGATGCTGTCTGCCGATCCAACAACATGAGAGACGGCAAGCTCAATACCTATTCCTTCGGGTATGGTACTGGTGAGCAGTCTCACTTTGGTAGGCACCATGTTTACGATAACTTCATCACCAACTGTATTCGTGGTGTTGGTCTCTCCAGCTTTGGTGATTCCACCATCCTGAACAACGGTGTATATGGTTATCAACGTTATGACATGGAGTTCCATGATAACGTCATCTCCAAGTGCACCTATGGGTTCTTTGCTGACCGTCCATGGTCTGGTTACTTCAAGCGTAACATCCTGATGCAGTGCACCAACGGTATCACTCGTCAAGGCGGTACTGTCAGTGGTAACACTGTTGCCAATATGGGTGTGTACACGACCCAGGATGTAACCGGTAACTATACCAACGATGGTACTTGGCTCAATTCTGCTGCCCCAGTTCTCACTGGCAGTATCATTGCAGGCGGTACTGTCTCGGTAGCTGGTGCTGTCTGGAAGCTTAACGGTGTCGTCACTGTACCGGATGAAGTCTTCTACGTATGGCGTAACAAGGGTTACGACATTGCAGGTGCTGCTGGTGACTCGTACACCATCCCTGTAGATGCTGCTTCCGATTTCGAACTGTCTTGCGTCATGTTTGCCCGTAAGGGAACCAACTGGATGCTTGCTGTTGCTGAAAACGATTGGCCTACAAGTGCCTACTTCATCCCAAGAGCATATACTGAAGGTGCTCTGGGTTGGAGGAAGCGTTACTTCAAGCTGGGCGATGTAGCATAG

Genome Context

Tertiary structure

YP_010658053.1
ColabFold structure
Source ColabFold
pLDDT 28.3
Oligomeric state monomer
Download structure

Literature

Title Authors Date PMID Source
Patterns of diversity and host range of bacteriophage communities associated with bean-nodulatin bacteria Vann Cauwenberghe,J., Santamaria,R.I., Bustos,P., Juarez,S. and Gonzalez,V. 1998-01 — GenBank