Protein

View in Explore
Genbank accession
AIX37109.1 [GenBank]
Protein name
tail collar domain protein
RBP type
TF
Evidence RBPdetect2
Probability 0,86
Protein sequence
MSQINFPNSPSDGEEFLASNGTTYRYDSSTGQWKILSGPGVQGPAGNTGPTGSIIMWGTSTLPEGYIECNGQSTSGYTALAALYGSNVPDLRGEFVRGWDNGKGTDSGRALLGSQGESFKSHTHTQNSHNHSQNAHNHTQNPHKHTQQLGGTISSDLLQSGSYRIGNANSASVSNTTATNKSTTATNNAATATNQSTGDTETRPRNISLMYIIKT
Physico‐chemical
properties
protein length:215 AA
molecular weight: 22699,16590 Da
isoelectric point:6,69696
aromaticity:0,06512
hydropathy:-0,77860

Domains

Domains [InterPro]
IPR051934
39–214
IPR051934
SSF88874
47–214
SSF88874
IPR037053
49–97
IPR037053
IPR011083
52–96
IPR011083
AIX37109.1
1 215
Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage ACG-2014f
[NCBI] 		1493511 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Synechococcus sp. WH 7803
[NCBI] 		32051 Bacteria > Cyanobacteria > Oscillatoriophycideae > Chroococcales > Synechococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AIX37109.1 [NCBI]
Genbank nucleotide accession
KJ019123 [NCBI]
CDS location
range 209867 -> 210514
strand +
CDS
ATGTCTCAAATTAATTTCCCAAATAGCCCATCCGATGGTGAAGAGTTTCTAGCATCTAATGGAACTACGTATCGATACGATAGTTCTACGGGTCAGTGGAAGATTCTATCAGGTCCTGGTGTTCAGGGACCCGCTGGTAATACAGGTCCTACTGGATCTATTATTATGTGGGGAACTTCAACACTACCAGAGGGATATATCGAATGTAATGGTCAATCTACTTCTGGATATACAGCTTTAGCTGCGTTATATGGTTCCAATGTCCCAGATCTTCGTGGTGAGTTTGTAAGGGGTTGGGATAACGGTAAGGGTACTGATAGTGGTCGGGCTCTATTGGGTAGTCAAGGCGAATCGTTTAAAAGCCACACACACACTCAGAATTCACACAATCACAGTCAGAATGCACACAATCACACACAGAATCCCCACAAACACACGCAACAACTGGGTGGAACTATTTCATCTGACCTTTTGCAATCCGGGAGCTATCGGATTGGTAACGCAAATTCTGCATCAGTTAGTAATACCACAGCAACCAATAAATCTACTACAGCAACCAATAATGCAGCCACAGCAACCAACCAAAGCACAGGTGATACTGAAACCCGTCCACGCAACATATCTTTGATGTATATTATTAAGACCTAG

Tertiary structure

PDB ID
636d0f3fbd2f385d42f26f157c93f25a6212157feae6d31ff220acc33def6bf6
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7741
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Ecological redundancy of diverse viral populations within a natural community Gregory,A.C., LaButti,K., Copeland,A., Woyke,T. and Sullivan,M.B. 2015-03-20 — GenBank