Protein

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Genbank accession
AIX13003.1 [GenBank]
Protein name
tail fiber protein
RBP type
TSP
Evidence DepoScope
Probability 0,68
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,96
TF
Evidence Phold
Probability 1,00
Protein sequence
MADAPKTTITYPLDGSNKDFPIPFEYLARKFVQVTLVGTDRKPLVLNIDFRFTQRTIITTTKTWGPSDGYSLIEIRRYTSATERLVDFSDGSILRAYDLNTSQVQSLHIAEEGRDIATDTIGVNNDGDLDARGRKIVNVADGTGDFDAVNLRQQKVWAGSALNQADRSKAEADRSQAQADRSTQQANASAQSAVNSETSNKASFAQADRSKNEADRATAQANEATRQAGLATTNGQAQLGLAQAEVRKATEQVGLATTQANRSTQEADRATAQANASAGSATASKGSADASAASAGQSAASAKVSKDNADKVLAGFASFGSMPLGSLVDLPRHNDAIIASMTSQGFVQCAGQSLDAEAHKELIAFLGTTVAPNGIGRYRKMSGDLSPGAAENPGNLVAGAIPAHAHTIPEHGHAASSSVAGWHAHAASAWTDAQGQHSHTIQSFNSGGVVGNSGYVATAGRAQVQYQVGGVDAAGNHAHNVGVSVAAEGNHQHAIYIGNQAAFSTTNAGSGATVETNRLMVWTWIKAKAPAGATQLNALLDRIAALEAKL
Physico‐chemical
properties
protein length:550 AA
molecular weight: 57218,15550 Da
isoelectric point:6,31489
aromaticity:0,05273
hydropathy:-0,35564

Domains

Domains [InterPro]
IPR005604
1–131
IPR005604 Coil Coil SSF88874
IPR011049
116–153
IPR011049
AIX13003.1
1 550
Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage Pf-10
[NCBI] 		1562076 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Pseudomonas fluorescens
[NCBI] 		294 Bacteria > Proteobacteria > Gammaproteobacteria > Pseudomonadales > Pseudomonadaceae > Pseudomonas
Host Pseudomonas putida
[NCBI] 		303 Bacteria > Proteobacteria > Gammaproteobacteria > Pseudomonadales > Pseudomonadaceae > Pseudomonas

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AIX13003.1 [NCBI]
Genbank nucleotide accession
KP025626 [NCBI]
CDS location
range 34028 -> 35680
strand +
CDS
ATGGCTGACGCTCCAAAGACAACGATCACGTATCCTCTTGACGGATCGAACAAAGACTTCCCGATCCCTTTCGAGTACCTTGCTCGTAAGTTCGTTCAGGTCACCCTTGTGGGTACTGATCGGAAACCTCTCGTACTCAACATTGACTTCCGCTTCACACAGCGCACGATCATCACCACGACCAAAACGTGGGGACCTTCGGACGGCTACAGCCTGATCGAGATCCGTCGTTACACCAGCGCCACAGAGCGTTTGGTTGACTTCTCGGACGGCTCCATCCTGCGTGCCTATGACCTGAACACCTCTCAGGTACAGTCGCTGCACATCGCTGAAGAAGGCCGTGACATCGCGACCGACACTATCGGCGTGAACAACGATGGCGACCTTGATGCCCGTGGTCGTAAGATCGTGAACGTGGCTGACGGCACCGGTGACTTCGATGCTGTGAACCTGCGACAACAGAAGGTCTGGGCTGGCTCTGCGCTTAATCAGGCTGACCGCTCCAAGGCTGAAGCTGACCGCTCTCAGGCACAAGCTGACCGCTCGACCCAGCAGGCCAATGCGTCCGCTCAAAGCGCTGTGAACTCCGAGACCTCGAACAAGGCATCGTTTGCGCAGGCTGATCGTTCTAAGAATGAAGCCGACCGGGCAACCGCTCAGGCCAACGAGGCAACCCGTCAAGCTGGTCTGGCTACAACCAACGGCCAAGCCCAACTGGGCCTCGCTCAGGCTGAAGTCCGTAAGGCCACCGAACAGGTCGGTCTGGCAACCACTCAGGCTAACCGATCCACTCAGGAAGCCGACCGGGCAACCGCTCAGGCCAACGCCTCTGCTGGTTCCGCTACGGCCTCTAAGGGTTCTGCTGATGCCTCTGCGGCCTCTGCTGGTCAATCTGCTGCATCCGCCAAGGTCTCCAAGGACAACGCCGACAAGGTGCTGGCAGGCTTCGCTTCGTTCGGTTCGATGCCGTTGGGTTCCCTTGTGGATCTACCGCGTCACAACGATGCGATCATTGCTTCGATGACCTCTCAGGGCTTCGTGCAGTGCGCCGGTCAGAGCTTGGACGCTGAGGCCCATAAAGAGCTGATCGCGTTCCTCGGAACCACAGTGGCCCCTAACGGGATTGGCCGGTATCGCAAGATGTCGGGTGACCTCTCTCCGGGCGCTGCTGAGAATCCGGGTAACCTCGTGGCTGGAGCCATTCCGGCCCACGCCCACACCATCCCTGAACACGGCCACGCCGCATCGTCCTCGGTAGCAGGCTGGCACGCCCACGCCGCATCCGCATGGACTGACGCTCAGGGCCAGCACAGCCACACCATCCAGTCTTTCAACTCCGGTGGTGTCGTGGGTAACTCCGGTTACGTCGCGACTGCTGGTCGGGCACAGGTCCAGTACCAAGTCGGTGGTGTTGACGCAGCCGGTAACCATGCCCACAACGTGGGTGTAAGTGTTGCCGCTGAAGGTAACCACCAGCACGCCATCTACATCGGCAACCAAGCTGCATTCAGCACGACCAATGCTGGCTCAGGTGCGACCGTAGAGACCAACCGTCTCATGGTCTGGACGTGGATCAAGGCGAAGGCGCCAGCCGGTGCCACTCAACTCAATGCTCTTCTGGACCGCATCGCGGCGCTGGAAGCCAAACTGTAA

Tertiary structure

PDB ID
fe162054874d58f503e1784e4b7ea7b643ffaf86d967107b164b6592f8fb896b
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7050
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence and comparative genome analysis of Pseudomonas phage Pf-10 Valentovich,L.N. and Pilipchuk,T.A. 2020-10 — GenBank