Protein

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Genbank accession
YP_009822200.1 [GenBank]
Protein name
tail fiber protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,88
TF
Evidence RBPdetect2
Probability 0,94
TF
Evidence UniProt/TrEMBL
Probability 1,00
Protein sequence
MATTETTLPGDGTAGPFTYTFPALVAENIYVSVDGTAKTAGVDYNLDFVNSQITFLNTPYPTAAEVIRIYRDTDDAALSANFYSGAAIRATDLNNNFNQALYIAQETKNLTVQASTGNLADGSITSNLIANGAVTTTKISDNNVTTAKLADNNVTTAKLADNNVTTAKLADSSVTTAKLADSNVTTAKLADSNVTTAKLADSSVTSTKIADGVNINFNLGTAGDPSFTFTGDTDTGLFSPGANILGISTNGTERIRVNALGALKASTTGSFVYPSDDSHEFTTNDSDYIAKFTNTDSSGPSGILIKYSAAAPNSNSKWFITCSDSAADRFIVYSNGGIANYQANNVNLSDINTKKNISSADDAWNCLKQWEIVKYHYKDQPDDADLNLGVIAQQIAGVCPEVVTTYQEAQEANGDTPAREELLGIKEQQMMWMAFKALQEAQHRIEQLESVVVSYDARLKALENN
Physico‐chemical
properties
protein length:465 AA
molecular weight: 49522,87480 Da
isoelectric point:4,44165
aromaticity:0,07742
hydropathy:-0,26624

Domains

Domains [InterPro]
DC_1576
STR
2–453
DC_1576
IPR005604
ATT
5–123
IPR005604 IPR030392 Coil
IPR030392
CHP
349–452
IPR030392
YP_009822200.1
1 465
Architecture
ATT
STR
ATT 2-123 | STR 124-453 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009822200.1
1 465
Domain Start End Length (AA) Confidence
N-terminal 1 201 201 0,9409
Central domain 202 400 200 0,0634
C-terminal 401 465 64 0,9988
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-201
Central
202-400
C-terminal
401-465

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage S-CBP4
[NCBI] 		754059 Uroviricota > Caudoviricetes > Autographivirales > Poseidonvirus > Poseidonvirus SCBP4
Host Synechococcus sp. CB0101
[NCBI] 		232348 Bacteria > Cyanobacteria > Oscillatoriophycideae > Chroococcales > Synechococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009822200.1 [NCBI]
Genbank nucleotide accession
NC_048183.1 [NCBI]
CDS location
range 9208 -> 10605
strand -
CDS
ATGGCGACTACTGAAACTACATTACCTGGTGACGGGACTGCCGGACCCTTTACCTATACCTTCCCGGCACTAGTTGCAGAGAACATCTATGTGTCAGTTGATGGCACAGCAAAAACTGCTGGTGTTGATTACAACCTTGACTTTGTAAATAGTCAAATCACCTTTCTAAATACACCATATCCAACTGCAGCTGAAGTCATTAGGATCTATCGTGATACTGATGATGCTGCATTGTCTGCTAACTTCTACTCTGGTGCAGCTATTCGAGCTACTGATTTGAATAATAACTTCAATCAAGCTCTTTACATTGCCCAAGAGACAAAGAACCTCACTGTTCAAGCTTCAACTGGTAACCTAGCGGATGGGTCAATTACTAGTAATTTGATTGCTAATGGTGCTGTTACTACAACTAAGATTTCTGATAATAATGTAACTACGGCTAAACTTGCTGACAACAATGTAACCACAGCTAAACTTGCTGACAACAATGTAACCACAGCTAAACTTGCTGACAGTAGCGTAACCACAGCTAAACTTGCTGACAGTAACGTAACTACGGCTAAACTAGCCGACAGCAATGTAACAACAGCTAAACTTGCCGATAGCTCAGTCACTAGCACCAAGATTGCTGATGGTGTTAATATCAACTTTAATCTTGGCACTGCAGGAGATCCATCTTTTACTTTTACTGGTGATACCGATACTGGTCTATTTTCTCCAGGTGCAAATATACTTGGGATTAGCACAAATGGTACTGAGCGTATTAGGGTAAATGCTCTTGGCGCCTTAAAGGCATCGACTACTGGTAGTTTTGTTTATCCATCCGATGATTCGCATGAGTTTACCACTAACGATTCTGATTATATTGCAAAGTTCACAAATACTGACTCGTCAGGTCCAAGCGGTATCTTAATTAAATACTCAGCTGCTGCACCTAACAGCAACAGTAAATGGTTTATTACCTGCTCTGACAGTGCTGCTGATAGGTTTATTGTTTACTCTAATGGTGGCATCGCTAACTATCAAGCTAATAATGTTAATCTTTCAGATATAAATACTAAAAAGAACATCTCATCAGCAGATGATGCCTGGAACTGTTTAAAGCAATGGGAGATTGTCAAGTATCACTATAAGGATCAACCTGATGATGCTGACCTAAATTTAGGTGTTATTGCCCAACAGATTGCTGGTGTTTGTCCTGAAGTCGTCACTACCTATCAAGAAGCTCAGGAAGCTAATGGTGATACTCCTGCGCGTGAAGAGCTTCTCGGTATTAAAGAGCAACAAATGATGTGGATGGCTTTCAAAGCACTTCAGGAAGCACAACATCGTATTGAACAACTTGAAAGTGTTGTTGTTTCATATGATGCTCGTCTTAAGGCTCTTGAGAACAACTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
6408f6a5a5201c274faa8d6bc4194e625d813bd3be96cde770eb5903064f6337
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7824
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Synechococcus phage S-CBP4 Henn,M.R., Chen,F., Wang,K., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E.R., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Haas,B., Nusbaum,C. and Birren,B. 2011-09-23 — GenBank