Protein

View in Explore
Genbank accession
YP_009822200.1 [GenBank]
Protein name
tail fiber protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,88
TF
Evidence RBPdetect2
Probability 0,87
TF
Evidence UniProt/TrEMBL
Probability 1,00
Protein sequence
MATTETTLPGDGTAGPFTYTFPALVAENIYVSVDGTAKTAGVDYNLDFVNSQITFLNTPYPTAAEVIRIYRDTDDAALSANFYSGAAIRATDLNNNFNQALYIAQETKNLTVQASTGNLADGSITSNLIANGAVTTTKISDNNVTTAKLADNNVTTAKLADNNVTTAKLADSSVTTAKLADSNVTTAKLADSNVTTAKLADSSVTSTKIADGVNINFNLGTAGDPSFTFTGDTDTGLFSPGANILGISTNGTERIRVNALGALKASTTGSFVYPSDDSHEFTTNDSDYIAKFTNTDSSGPSGILIKYSAAAPNSNSKWFITCSDSAADRFIVYSNGGIANYQANNVNLSDINTKKNISSADDAWNCLKQWEIVKYHYKDQPDDADLNLGVIAQQIAGVCPEVVTTYQEAQEANGDTPAREELLGIKEQQMMWMAFKALQEAQHRIEQLESVVVSYDARLKALENN
Physico‐chemical
properties
protein length:465 AA
molecular weight: 49522,87480 Da
isoelectric point:4,44165
aromaticity:0,07742
hydropathy:-0,26624

Domains

View on InterPro
Domain architecture
YP_009822200.1
1 465 aa
ATT 5–123 · CHP 349–452 ·
ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped
Proteins with similar domain architecture

Tail Spike Domain Segmentation

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout
YP_009822200.1
1 465 aa
Domain Start End Length (AA) Confidence
N-terminal 1 201 201 0,9409
Central domain 202 400 200 0,0634
C-terminal 401 465 64 0,9988
N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Taxonomy

Phage
Synechococcus phage S-CBP4 [NCBI] · taxon 754059
Uroviricota Caudoviricetes Autographivirales Poseidonvirus Poseidonvirus SCBP4
Host
Synechococcus sp. CB0101 [NCBI] · taxon 232348
Bacteria Cyanobacteria Oscillatoriophycideae Chroococcales Synechococcus

Coding sequence (CDS)

Genbank protein accession
YP_009822200.1 [NCBI]
Genbank nucleotide accession
NC_048183.1 [NCBI]
CDS location
range 9208 -> 10605
strand -
CDS
ATGGCGACTACTGAAACTACATTACCTGGTGACGGGACTGCCGGACCCTTTACCTATACCTTCCCGGCACTAGTTGCAGAGAACATCTATGTGTCAGTTGATGGCACAGCAAAAACTGCTGGTGTTGATTACAACCTTGACTTTGTAAATAGTCAAATCACCTTTCTAAATACACCATATCCAACTGCAGCTGAAGTCATTAGGATCTATCGTGATACTGATGATGCTGCATTGTCTGCTAACTTCTACTCTGGTGCAGCTATTCGAGCTACTGATTTGAATAATAACTTCAATCAAGCTCTTTACATTGCCCAAGAGACAAAGAACCTCACTGTTCAAGCTTCAACTGGTAACCTAGCGGATGGGTCAATTACTAGTAATTTGATTGCTAATGGTGCTGTTACTACAACTAAGATTTCTGATAATAATGTAACTACGGCTAAACTTGCTGACAACAATGTAACCACAGCTAAACTTGCTGACAACAATGTAACCACAGCTAAACTTGCTGACAGTAGCGTAACCACAGCTAAACTTGCTGACAGTAACGTAACTACGGCTAAACTAGCCGACAGCAATGTAACAACAGCTAAACTTGCCGATAGCTCAGTCACTAGCACCAAGATTGCTGATGGTGTTAATATCAACTTTAATCTTGGCACTGCAGGAGATCCATCTTTTACTTTTACTGGTGATACCGATACTGGTCTATTTTCTCCAGGTGCAAATATACTTGGGATTAGCACAAATGGTACTGAGCGTATTAGGGTAAATGCTCTTGGCGCCTTAAAGGCATCGACTACTGGTAGTTTTGTTTATCCATCCGATGATTCGCATGAGTTTACCACTAACGATTCTGATTATATTGCAAAGTTCACAAATACTGACTCGTCAGGTCCAAGCGGTATCTTAATTAAATACTCAGCTGCTGCACCTAACAGCAACAGTAAATGGTTTATTACCTGCTCTGACAGTGCTGCTGATAGGTTTATTGTTTACTCTAATGGTGGCATCGCTAACTATCAAGCTAATAATGTTAATCTTTCAGATATAAATACTAAAAAGAACATCTCATCAGCAGATGATGCCTGGAACTGTTTAAAGCAATGGGAGATTGTCAAGTATCACTATAAGGATCAACCTGATGATGCTGACCTAAATTTAGGTGTTATTGCCCAACAGATTGCTGGTGTTTGTCCTGAAGTCGTCACTACCTATCAAGAAGCTCAGGAAGCTAATGGTGATACTCCTGCGCGTGAAGAGCTTCTCGGTATTAAAGAGCAACAAATGATGTGGATGGCTTTCAAAGCACTTCAGGAAGCACAACATCGTATTGAACAACTTGAAAGTGTTGTTGTTTCATATGATGCTCGTCTTAAGGCTCTTGAGAACAACTAG

Genome Context

Tertiary structure

YP_009822200.1
ESMFold structure
Source ESMFold
pLDDT 78.2
Oligomeric state monomer
Download structure

Literature

Title Authors Date PMID Source
The Genome Sequence of Synechococcus phage S-CBP4 Henn,M.R., Chen,F., Wang,K., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E.R., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Haas,B., Nusbaum,C. and Birren,B. 2011-09-23 — GenBank