Protein

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Genbank accession
QIG72940.1 [GenBank]
Protein name
tail spike protein with colonic acid degradation activity
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,89
TSP
Evidence RBPdetect2
Probability 0,94
Protein sequence
MVDFTNTAEFILPAFNLTGSGPLYTGYGAAGNPVDGTAFGLKIKQANSFSITDPIIKQITNGIDVSQTPSWQDGGTIRGGRISHCYRGIWIHDVGEGVFVTGANVSDCVFGVVVDSGNSNLANGQTTRCSVGLLIGPSSGAGVNGAHASVMGWNSRHNKYNLSCQNVTLGHYIGGSNFIGGQGGADQGGIQIYNSKGIMIDGGQTAYCDISVDATSQLVMRDVIFRGPVNITVASGGSFDAKGCFAMAGATLTLNGSTFSGNTP
Physico‐chemical
properties
protein length:264 AA
molecular weight: 27133,96840 Da
isoelectric point:5,87752
aromaticity:0,08333
hydropathy:0,03750

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QIG72940.1
1 264
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,0067
Central domain 11 253 244 0,9987
C-terminal 254 264 10 0,1943
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-253
C-terminal
254-264

Taxonomy

  Name Taxonomy ID Lineage
Phage Rhizobium phage RHph_N3_2
[NCBI] 		2509747 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QIG72940.1 [NCBI]
Genbank nucleotide accession
MN988526.1 [NCBI]
CDS location
range 15798 -> 16592
strand +
CDS
ATGGTCGATTTTACCAATACCGCTGAATTCATTCTCCCTGCCTTCAACCTCACCGGCTCGGGTCCGCTCTATACGGGCTATGGTGCCGCGGGGAACCCGGTGGACGGAACGGCATTCGGCCTGAAGATCAAGCAGGCCAATTCCTTCTCAATCACCGATCCGATCATTAAGCAGATCACGAACGGGATTGATGTTTCGCAGACGCCATCATGGCAGGACGGCGGCACGATCCGCGGCGGTCGAATTTCCCACTGCTATCGCGGCATCTGGATTCACGATGTTGGGGAAGGGGTTTTCGTCACCGGGGCCAACGTTTCGGACTGCGTCTTCGGCGTGGTCGTGGACAGCGGCAACAGCAACCTTGCGAACGGGCAGACAACGCGCTGCTCTGTCGGGCTGCTCATCGGTCCATCTTCAGGCGCAGGCGTGAATGGCGCTCATGCTTCGGTAATGGGCTGGAATTCGCGCCACAACAAATACAATCTGTCCTGCCAGAACGTCACGCTTGGACATTATATCGGCGGCAGCAACTTCATCGGCGGTCAGGGTGGCGCGGATCAGGGCGGAATCCAGATCTACAATTCCAAGGGCATTATGATCGACGGCGGCCAGACAGCCTATTGCGATATCTCGGTGGACGCTACCAGTCAGCTCGTCATGCGGGATGTGATCTTCCGCGGCCCGGTCAATATCACGGTTGCCTCTGGTGGTTCTTTCGATGCAAAGGGCTGTTTTGCGATGGCCGGCGCGACTCTCACACTCAACGGCTCGACCTTCAGCGGCAATACGCCTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
7fb0a286c6c7608cd14df00b3257511be653dc1161b2f3475c727cfb412042eb
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8553
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Patterns of diversity and host range of bacteriophage communities associated with bean-nodulatin bacteria Vann Cauwenberghe,J., Santamaria,R.I., Bustos,P., Juarez,S. and Gonzalez,V. 1998-01 — GenBank