Protein

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Genbank accession
YP_010095214.1 [GenBank]
Protein name
hinge connector of long tail fiber protein distal connector
RBP type
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,89
TF
Evidence RBPdetect2
Probability 0,91
TF
Evidence UniProt/TrEMBL
Probability 1,00
Protein sequence
MADLKAGTTVGGAMVWTQGNFPLFPSGNTLLYRDYTVYTTNDKPQAADNDFVSKAQGGTFEKTITMKGSVSSATMMQLQGTAVGTQYALTDSAGALTGSNYQIYAQGDQFKFRAPNTVAAGLIDVLIWTNPTKRFDLSGNLYVSGSVYNLYDSTGGIFYSPKNKPVAADVGLGNVTNDAQLKIASNLSDVANVDTARTNISAAKSGTNSDITSLTALTSITKGLTLSSTLTVSGATTVNNTLNVTQASTFNSTVGITGNTTIGGNTYISGLATVAGTLGVTGRTTLTGLTINHTTANWLDITGAYSPTTNQYMTNGIRIWNRENRLVDLYNFESVGNYSALTVHVYNSANSNEAGAYYEFRNSGLFVAPSISSNTTIAAGADIRARGSMYVGNGDTRMAHDGNIWGTRWNGSGEWLYDWMNRTYLNDIFLGGQQWWNTPVGPNTRRDWALGSGSVCTGYTQTDEGSYHIWIDGMFYRQIWKRYANGAQAIIAST
Physico‐chemical
properties
protein length:494 AA
molecular weight: 52951,98440 Da
isoelectric point:6,43005
aromaticity:0,10526
hydropathy:-0,23826

Domains

Domains [InterPro]
DC_0466
STR
1–315
DC_0466 G3DSA:6.20.70.20
DC_1776
RBD
405–493
DC_1776
YP_010095214.1
1 494
Architecture
STR
RBD
STR 1-315 | RBD 389-493 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010095214.1
1 494
Domain Start End Length (AA) Confidence
N-terminal 1 224 224 0,0786
Central domain 225 428 205 0,5738
C-terminal 429 494 65 0,9153
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-224
Central
225-428
C-terminal
429-494

Taxonomy

  Name Taxonomy ID Lineage
Phage Erwinia phage Cronus
[NCBI] 		2163633 Uroviricota > Caudoviricetes > Pantevenvirales > Tevenvirinae > Risoevirus
Host Erwinia amylovora
[NCBI] 		552 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010095214.1 [NCBI]
Genbank nucleotide accession
NC_055743 [NCBI]
CDS location
range 163400 -> 164884
strand +
CDS
ATGGCCGATTTAAAAGCCGGTACTACAGTCGGTGGTGCAATGGTCTGGACTCAGGGTAATTTCCCTCTGTTCCCATCAGGTAACACTCTGTTGTATCGCGATTATACAGTATACACAACAAATGACAAACCTCAGGCCGCTGATAACGATTTCGTTTCAAAAGCACAGGGCGGTACATTTGAAAAAACTATTACTATGAAAGGTAGTGTTAGTTCAGCAACAATGATGCAATTACAGGGTACTGCAGTAGGTACTCAATATGCTTTAACAGATTCAGCTGGAGCATTAACTGGTTCTAATTATCAGATCTATGCACAAGGTGATCAATTTAAATTCCGTGCTCCTAATACAGTAGCTGCTGGATTGATTGACGTTTTAATTTGGACTAATCCTACAAAACGATTTGATCTATCTGGTAACTTATACGTATCTGGAAGCGTATATAATCTTTATGATTCAACTGGCGGAATTTTTTATAGTCCTAAAAATAAGCCGGTTGCAGCGGATGTTGGATTAGGTAATGTTACTAATGATGCTCAATTAAAAATTGCAAGTAATCTTTCTGATGTAGCAAATGTTGATACTGCTCGTACTAATATTAGTGCTGCTAAGTCTGGCACTAACTCAGATATTACATCTTTGACTGCATTAACATCAATAACTAAAGGATTGACATTATCAAGCACTTTAACAGTTTCTGGAGCAACAACTGTAAATAACACTTTAAATGTTACGCAGGCTTCTACTTTTAACAGTACTGTAGGAATTACAGGAAACACTACAATAGGCGGAAACACCTATATTTCAGGACTTGCTACAGTCGCTGGAACTTTAGGTGTAACAGGCCGAACTACTTTAACCGGATTAACAATTAATCATACTACTGCAAACTGGCTTGATATTACTGGCGCATATTCTCCTACCACAAATCAGTACATGACAAATGGTATTCGCATTTGGAATAGAGAGAATAGACTTGTTGATCTGTATAATTTTGAAAGTGTTGGAAATTATAGCGCACTGACTGTACATGTTTATAATTCAGCTAATTCAAATGAGGCTGGTGCATATTATGAATTTAGAAATAGCGGATTGTTTGTTGCTCCATCTATTTCATCTAATACTACAATTGCCGCCGGGGCTGATATAAGAGCTCGTGGATCAATGTATGTTGGTAATGGTGATACAAGAATGGCTCATGACGGCAATATCTGGGGTACACGTTGGAACGGTAGTGGTGAATGGCTTTATGATTGGATGAATCGCACCTATTTAAATGATATATTTTTAGGTGGCCAGCAATGGTGGAACACTCCTGTTGGTCCAAATACCAGAAGAGATTGGGCACTTGGTAGTGGTTCTGTTTGTACAGGATATACACAAACCGATGAAGGCTCTTATCATATTTGGATAGATGGTATGTTTTACCGTCAAATTTGGAAACGATATGCGAATGGTGCCCAAGCTATTATTGCAAGTACATAG

Genome Context

Genome Context

Tertiary structure

PDB ID
e3fc92a7317ce5f3694b26e1d8b680155e702a1214543f1190235d6bf3d02aae
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6988
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Phage therapy in agriculture - a green tech approach to combat plant pathogenic bacteria Carstens,A.B., Djurhuus,A.M. and Hansen,L.H. 2021 — GenBank