Phage RBP Database

Genbank accession

XYH45468.1 [GenBank]

Protein name

tail fiber protein

RBP type

TF

Evidence GenBank

Probability 1,00

TSP

Evidence DepoScope

Probability 1,00

TF

Evidence RBPdetect

Probability 0,90

TF

Evidence RBPdetect2

Probability 0,96

Protein sequence

MAQAPRTTVTYPLDGANRDFQIPFEYLARKFVQVTLVGVDRKVLVLNIDYRFTQRTIITLTKNWGPSDGYQLVEIRRYTSATERLVDFSDGSILRAYDLNTSQVQSLHIAEEGRDIATDTIGVNNEGHLDARGRKIVNVADGTGDFDVVNLRQVKGWGDSALNQANRAQREADRSQQQADRSTTEANRSRDEANRSTGQASRAEGEANRSTQQADRSKGEADRATGQANLATSNGAAQVQLAKDQVGLATQEANRATQQANLATTNGAAQVKLAADEVTKAKTEVVRASAQADRSTNKATASSGFADAAEASNKSAKAQADRSKSEADRAKSEADKLGNMNNLGGAIEDIHEQKVIWKGEQVTRHSFTSATDGEANFRFQNQDGSGGLRFVRISKANRDVHLYDDNTSSARMTWGTGVTYNNGAFKVTSGGLDVTGATDLRGNTTVSGSIRATGEITCPDTIRAGSTVAAQIEGDDAGNVHFWLRSKDGAERGLVYGDKGKQLHIRANSQPDTFLIKANGQVDVGHQMATRGGLENTGRIASYRNGVGANANMYANCHYMAQTDDGSPPAYGFHRGGSYALALWLNGQELHIMDSSGTNRALLTNVSGQKKFPFQAGRIGIGAPGGGYRQFRVNFHKPMANAVVQLTMHRPNLHQGVGARGEMWTDGIDANGFTFWAHCEGGAQWDAHVDWIATVSVETIS

Physico‐chemical properties

protein length:	701 AA
molecular weight:	75610,21820 Da
isoelectric point:	7,29667
aromaticity:	0,06562
hydropathy:	-0,61455

Domain architecture

XYH45468.1

1 701 aa

ATT 1–131 · STR 132–156 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR005604
ATT

IPR005604 Coil Coil

IPR011049
STR

IPR011049

XYH45468.1

1701 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_0657
STR

DC_0657

XYH45468.1

1701 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR005604	ATT	DC_0240	1	131	InterPro cluster	Bacteriophage T7 tail fibre protein-like, N-terminal domain	Central	Medium	Text match	1326 proteins / 1328 hits
IPR011049	STR	IPR011049	115	156	Merged direct domain	Serralysin-like metalloprotease, C-terminal	Central	Low	Positional only	81 proteins / 81 hits
Coil	Unmapped	-	158	185	Coils	Coil	-	-	-	-
Coil	Unmapped	-	306	340	Coils	Coil	-	-	-	-

Proteins with similar domain architecture

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout

XYH45468.1

1 701 aa

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	348	348	0,9931
Central domain	349	547	200	0,2571
C-terminal	548	701	153	0,9882

N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Phage

Pseudomonas phage Inox [NCBI] · taxon 3395521

Viruses

Host

Pseudomonas syringae pv. tomato str. DC3000 [NCBI] · taxon 223283

Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas syringae group genomosp. 3

Genbank protein accession

XYH45468.1 [NCBI]

Genbank nucleotide accession

PV037722.1 [NCBI]

CDS location

range 21977 -> 24082
strand +

CDS

ATGGCTCAAGCACCACGTACCACGGTGACGTACCCACTTGACGGTGCGAATCGAGACTTTCAGATCCCCTTCGAATACCTTGCCCGGAAGTTCGTGCAGGTAACACTCGTGGGTGTAGATCGTAAAGTCCTTGTCCTGAATATCGACTACCGGTTCACGCAACGAACCATCATCACCCTGACCAAGAACTGGGGTCCGTCAGACGGCTACCAACTGGTAGAGATCCGTCGATACACCTCGGCTACTGAACGGCTGGTGGACTTCTCTGACGGCTCCATCCTGCGTGCCTATGACCTGAACACCTCTCAGGTTCAATCGCTTCACATTGCTGAAGAAGGCCGTGACATCGCAACCGACACTATCGGTGTGAACAACGAAGGTCACCTCGACGCTCGTGGTCGTAAGATCGTGAACGTGGCGGATGGTACTGGTGACTTCGATGTCGTTAACCTGCGCCAAGTCAAGGGCTGGGGCGACTCAGCATTGAACCAAGCCAACCGGGCACAGCGTGAAGCTGACCGCTCGCAACAACAGGCGGATCGCTCGACCACTGAAGCCAACCGCTCCCGTGATGAAGCCAACCGCTCTACTGGTCAAGCCAGTCGTGCCGAAGGTGAAGCCAACCGCTCCACGCAACAGGCTGACCGCTCTAAAGGCGAAGCTGATCGTGCAACCGGCCAAGCGAACCTCGCCACATCTAACGGTGCAGCTCAGGTACAACTCGCTAAGGACCAAGTAGGTCTCGCCACTCAGGAAGCCAACCGTGCGACCCAACAGGCGAACCTTGCGACGACTAATGGTGCCGCTCAGGTCAAACTGGCTGCCGATGAAGTCACCAAGGCGAAGACTGAGGTCGTTCGTGCATCCGCTCAGGCCGACCGCTCGACGAACAAGGCGACTGCATCCTCTGGGTTTGCTGATGCTGCTGAGGCGAGCAACAAATCGGCCAAGGCTCAGGCTGACCGCTCCAAGAGCGAAGCTGACCGTGCGAAGTCTGAGGCGGATAAGCTGGGCAACATGAACAACCTTGGAGGTGCCATTGAGGACATCCATGAGCAGAAGGTAATCTGGAAGGGTGAGCAAGTGACCCGGCACAGTTTCACATCTGCTACGGATGGTGAGGCCAACTTCAGGTTCCAGAACCAAGACGGCTCAGGAGGTCTACGCTTCGTTCGAATCTCCAAGGCCAACCGTGATGTCCACCTCTACGACGACAATACGTCCAGCGCACGGATGACTTGGGGGACCGGCGTGACGTACAACAACGGAGCCTTTAAGGTCACCTCTGGCGGTCTGGATGTCACTGGCGCTACGGACCTTCGAGGCAACACTACGGTGTCCGGCTCTATCCGTGCAACCGGTGAGATCACCTGTCCCGACACTATCCGGGCAGGCAGTACAGTCGCTGCACAGATCGAAGGTGATGATGCCGGGAACGTCCACTTCTGGCTACGGTCGAAGGATGGCGCTGAGCGTGGTCTCGTATACGGTGACAAAGGAAAGCAGTTGCACATCCGTGCGAACAGCCAGCCCGATACGTTCCTCATTAAGGCGAACGGTCAGGTTGACGTTGGGCACCAGATGGCGACCCGTGGTGGCTTGGAGAACACCGGTCGAATCGCCTCCTACCGCAACGGTGTCGGAGCGAACGCAAACATGTACGCAAACTGCCACTACATGGCCCAGACGGATGATGGATCGCCTCCAGCTTACGGATTCCACCGTGGCGGCTCCTACGCTCTTGCGTTGTGGCTTAACGGTCAAGAGCTGCACATCATGGATTCGTCGGGTACGAACCGCGCCCTGCTGACCAACGTGTCCGGCCAGAAGAAGTTCCCGTTCCAAGCTGGCCGCATTGGTATTGGTGCGCCGGGTGGTGGTTACCGCCAGTTCCGGGTAAACTTCCACAAGCCAATGGCGAACGCCGTTGTCCAGTTGACGATGCACCGGCCAAACCTCCATCAGGGTGTGGGGGCGCGTGGTGAAATGTGGACAGATGGTATCGACGCCAACGGCTTCACCTTCTGGGCACACTGCGAAGGTGGCGCACAGTGGGATGCTCACGTGGATTGGATTGCAACTGTCTCTGTGGAGACCATTAGCTAA

Protein

Domains

Tail Spike Domain Segmentation

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)