Protein

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Genbank accession
YP_224261.1 [GenBank]
Protein name
putative hemagglutinin protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,93
Protein sequence
MTIPKLTPYTGQVANPDGSQTQTEFTTNMFNQLSYEANLATELDATIDGINNAVDEVSQNTAIAESSANAAEAAASSAGYKGLWPDTGGSANKGDTYQTQVGGTPTGEYFTALQNTTVDPVGDNVNWKVNVSVSSLIQPRYEADSVELALDSITSSGKVIEAKIGDKWNVKGVDFIRVAVGTDRSALLIDSNETVTNALRVSNRRTVKEFSTEEIKSKAESSHLLTIAGPSSKLQFSRLTVPVDSANDLEFYIDANLSTPLNNSTSSTNFYLVGVACDDVLRSGAVNKPIGTIETTDRGYKLTVPSSDLTSTHFSLDLRLNTGADASGEITSIVAKQQGVKVGDTLYNLIRQSDEWTADNRNTSFAEPSGSFLSGQDIDRGMSSITSNNVLSVSKSGLNSYLSKRTSLEFYNDVIQNESSPVLVKALAMDSGDYYPYRQQFALNVLGDVALIAQGGAVNIMCGDEIAPTFVSSSGGVDYYTAPWDDDRHYNDDVRSGAAQPRLSAEMVNSTESVYKYQLTPTTSIVSVQSTPNTSYYDSGTGTVHLSYPAGYIPPKIYVTCTSNGVNEYNPGGSTPSFDIFGFNINIYAAESNNWFIRPSNYAPYPTVSSKFVSLHSCSGIASGAGEGIFIGNVDYDLVDCTFNSNGNDGFNHHFSGLGYVEGGRGWNNSQDGMSHHEQQIAYCKGVSLNYSGAANCVPAFGCDVYMYRCESVTASDGLTTKVYAGTFCALSSQSQGNAKAVYDSCYTDNTLNRSIGGYLSSSLDATSVSTVVVKNPISNLDGAKLTDKTGNADNVMLIIP
Physico‐chemical
properties
protein length:801 AA
molecular weight: 85564,00490 Da
isoelectric point:4,56124
aromaticity:0,08864
hydropathy:-0,28614

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_224261.1
1 801
Domain Start End Length (AA) Confidence
N-terminal 1 380 380 0,5510
Central domain 381 785 406 0,9179
C-terminal 786 801 15 0,6042
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-380
Central
381-785
C-terminal
786-801

Taxonomy

  Name Taxonomy ID Lineage
Phage Listonella phage phiHSIC
[NCBI] 		310539 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Listonella pelagia
[NCBI] 		28169 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_224261.1 [NCBI]
Genbank nucleotide accession
NC_006953 [NCBI]
CDS location
range 21870 -> 24275
strand +
CDS
ATGACCATTCCAAAGTTAACACCATACACCGGACAAGTAGCAAATCCAGACGGTAGCCAAACTCAAACAGAGTTTACTACCAATATGTTTAATCAGCTCAGTTATGAAGCAAATTTAGCAACAGAGTTAGACGCTACAATTGACGGAATCAATAACGCTGTCGATGAGGTAAGCCAGAATACCGCTATCGCTGAAAGCTCAGCCAATGCAGCGGAAGCGGCTGCATCGTCGGCGGGCTACAAAGGCTTATGGCCCGACACAGGCGGCAGTGCTAATAAGGGCGATACATATCAAACTCAAGTTGGTGGAACACCGACTGGTGAATATTTCACCGCCTTGCAAAATACGACCGTTGACCCTGTAGGGGATAACGTTAATTGGAAGGTTAATGTTAGTGTAAGCAGTTTAATACAGCCAAGATATGAAGCGGACAGTGTAGAGCTTGCGCTGGATTCTATCACGTCATCTGGAAAGGTTATTGAAGCAAAAATTGGAGATAAGTGGAATGTAAAGGGTGTTGATTTTATCCGCGTTGCCGTCGGCACAGATAGATCTGCGCTTTTGATTGACTCTAATGAGACTGTTACAAATGCGCTCAGAGTTTCAAATAGACGCACGGTTAAGGAGTTTTCAACCGAAGAGATTAAATCAAAAGCAGAAAGTAGTCACTTACTGACGATTGCAGGCCCATCGTCTAAGTTGCAATTCTCTCGACTTACTGTACCAGTAGACTCAGCAAATGATTTGGAGTTTTACATTGACGCAAATCTAAGTACACCACTTAATAACTCAACAAGTTCAACAAACTTCTACCTAGTAGGCGTTGCTTGTGATGATGTATTGCGTAGCGGCGCGGTAAATAAACCTATAGGTACAATCGAGACAACCGACCGTGGTTACAAACTGACAGTCCCATCCTCAGACCTAACTAGTACGCACTTTTCTCTGGATTTAAGATTAAACACTGGCGCAGACGCTAGCGGTGAGATTACTTCAATTGTAGCAAAGCAGCAAGGTGTGAAAGTCGGTGATACTCTTTACAATTTGATTCGTCAATCAGATGAGTGGACAGCTGACAATAGAAATACATCTTTCGCAGAGCCTTCTGGGTCATTCCTCAGCGGACAAGATATTGACAGAGGGATGTCATCCATAACCTCTAACAATGTGCTAAGCGTAAGCAAAAGCGGTCTTAACTCTTACTTATCAAAGCGAACTAGCCTAGAGTTTTACAATGATGTAATTCAAAACGAATCATCTCCGGTTCTTGTTAAAGCACTCGCAATGGATAGTGGCGATTACTACCCTTACCGCCAACAGTTTGCTTTAAACGTCCTTGGTGATGTTGCGCTAATCGCTCAAGGCGGAGCGGTAAACATCATGTGTGGAGATGAGATAGCACCTACGTTTGTATCCAGCTCTGGCGGTGTAGATTACTACACAGCGCCTTGGGATGATGACAGACATTATAATGATGACGTAAGAAGCGGAGCAGCTCAGCCTCGCTTGTCTGCCGAGATGGTAAACTCTACTGAGTCTGTTTATAAGTACCAGCTAACACCTACCACGTCGATAGTTAGCGTACAAAGCACGCCTAACACTAGTTATTATGATAGTGGGACTGGCACAGTGCACTTGAGCTATCCAGCAGGATACATTCCGCCTAAAATCTACGTGACTTGCACAAGTAACGGTGTTAACGAATACAATCCGGGAGGTTCTACACCATCTTTTGATATCTTCGGCTTTAACATCAATATCTATGCAGCGGAGAGTAACAACTGGTTTATACGCCCATCAAATTACGCTCCATACCCTACGGTATCATCAAAGTTTGTATCTCTTCATTCGTGCTCAGGGATTGCGTCTGGTGCTGGGGAAGGGATTTTCATAGGCAACGTTGATTACGATCTTGTGGATTGCACTTTTAACAGTAATGGTAATGACGGATTTAACCATCACTTTAGCGGACTTGGCTACGTTGAAGGGGGTAGAGGTTGGAATAACTCACAGGATGGGATGAGTCACCATGAGCAACAAATAGCCTACTGTAAGGGAGTTTCACTAAACTACAGCGGTGCAGCGAACTGCGTACCTGCTTTTGGGTGTGATGTGTACATGTACAGATGTGAAAGCGTTACAGCTTCAGACGGATTAACAACTAAAGTTTACGCTGGTACATTCTGCGCTTTATCAAGCCAGTCTCAAGGTAATGCAAAGGCTGTTTATGACAGTTGTTACACGGATAACACCTTAAACAGGTCTATTGGTGGGTATCTTAGCTCATCCCTTGATGCTACGAGCGTGTCAACGGTTGTTGTTAAAAATCCAATATCAAACCTTGATGGGGCCAAGCTAACCGACAAAACAGGCAATGCTGACAACGTAATGCTGATTATACCCTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
2f4e604f64193ae73346cc217fa717455d6b332300eb854109aaf40c53548bca
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6589
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50