Phage RBP Database

Genbank accession

GENB_c4d1dfdd42f5 [GenBank]

Protein name

tail spike protein

RBP type

TSP

Evidence DepoScope

Probability 1,00

Seq2Symm

C1 confidence 1,000

C1	1,000
C2	0,002
D2	0,000

Predicted homo-oligomer symmetry (Seq2Symm, per-class probabilities; C1 = monomer, C2 = dimer, C3 = trimer).

Protein sequence

MKKISMRVVLIVTVIFITFGSANVSIAQEMDTTNKLPEEELGSLDTSDVITEGVPQEKPAEAENLEEILTTDELEQNPEVLEQPIADSDDSDLTVVNSGDFWTIYRNTANGEYSLHMFGNVPSSKPSAWNGYLNRINHIEIEEATLTGDFESYFRSNVFLALESVRIERSNLSGVTSFANAFYASRAEKIIIKDNDYPTASSLLTTENMFKYCSSLTELDVSGLDTSAVTNMTEMFYGCNALKELDASNFDTSSVTDMNSMFISCSALEKLDVSNFDTSSVTDMNSMFRGCSALKKLDASNFDTSSVTNMNNMFFACASLEELNASNFDTSSVTDMNSMFRYCNKLKKLDISNFDTSSVTDMNSMFRTCSALERVDVSNFDTSSVTDMNRMFDECKSLEILDVSNFDTNSVTDMGYMFYENEKLKKLDLSNFDTSSVTDMSFMFFQCTGLEELDVSNFDTNSVTNMSYMFYKCAGLEELDLSNFDTSSVTDMSFMFFQSTGLKKLDLSNFDTSSVTNMSYMFATCTALKSLYLDNFTDVSGGTVNMFIETSSLTYLFVSHNFKDFSGLENTNWYDEKNWAQFTNRSELQTYHQKQIEPTGYRKGVFHSLTMDAMGGQFDDAEEQKVQNKVPGDYWEEMIPVKEDYYFDGWYVDQDFTSKFDFSMPATASTTIYAKWIENYTVVIPASISLNETSELKVEGINRGSKTLSVGLNRTATSISESNELTLAHAADTTIQCLAPLSWDGSENNPKNAILTLAPGSEITEGDAVMDIEAPEDIQAGKYTGNLVFSIKYE

Physico‐chemical properties

protein length:	794 AA
molecular weight:	88867,71530 Da
isoelectric point:	4,22657
aromaticity:	0,10831
hydropathy:	-0,29748

Domain architecture

GENB_c4d1dfdd42f5

1 794 aa

STR 113–562 · RBD 610–690 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR032675
STR

IPR032675 IPR042229

SSF52047
STR

SSF52047

GENB_c4d1dfdd42f5

1794 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_2029
ATT

DC_2029 DC_1444

GENB_c4d1dfdd42f5

1794 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR032675	STR	IPR032675	113	356	Merged direct domain	Leucine-rich repeat domain superfamily	Central	Low	Positional only	55 proteins / 55 hits
SSF52047	STR	SSF52047	311	562	Merged direct domain	SSF52047	Central	Low	Positional only	2 proteins / 2 hits
IPR042229	RBD	IPR042229	610	690	Merged direct domain	Listeria-Bacteroides repeat domain superfamily	C-terminal	Low	Positional only	14 proteins / 14 hits

Proteins with similar domain architecture

Phage

Listeria phage LM 4-11-1 [NCBI] · taxon 3113835

Listeria phage LM 4-11-1

Host

Listeria monocytogenes [NCBI] · taxon 1639

Bacillota Bacilli Caryophanales Listeriaceae Listeria Listeria monocytogenes

Genbank protein accession

OR847117.1_CDS_[complement(958..3342)] [NCBI]

Genbank nucleotide accession

OR847117.1 [NCBI]

CDS location

range 958 -> 3342
strand -

CDS

Protein

Domains

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)