Phage RBP Database

Genbank accession

XRA11009.1 [GenBank]

Protein name

central tail fiber J

RBP type

TF

Evidence GenBank

Probability 1,00

TSP

Evidence RBPdetect

Probability 0,82

TF

Evidence RBPdetect2

Probability 0,96

Protein sequence

MVKNMITGSKGGSSKPHTPVEMEDNLISINRIRILLAVSDGEVDPDFSLKDLYFDDVPVMNQDGSLNFQNVKAEFRPGSQTQDYIQGFTDTASEITVARDLTAATPYIISVTNKNLSAIRIKILMPRGFTQEDNGDLTGVRVEYAVDMAIDGAEYNEVLHDVIEGKTMSGYDRSRRIDLPAFNERVLLRVRRLTDSTSARVTDLIKMQSYAEVVDAKFRYPMTGLVYVEFDSELFPNALPNISIKKKWKIINVPSNYDPISRTYSGSWDGTWKKAWSNNPAFVLYDLITNQRYGLDQRELGIALDKWSIYECAQYCDQMVPDGKGGTEPRYLCDVVIQSQVEAYQLVRDICSIFRGMSFWNGESLSIVIDKPRDPSYIFTNDNVVNGEFTYTFASEKSMYTQCNVTFDDEQNMYQQDVEGVFETEAALRFGYNSTSITAIGCTRRSEANRRGRWILKTNVKSTTVNFATGLEGMIPTVGDVIVVSDNFWSSALTLNLSGRLMEVSGLQVFTPFKVDARAGDRILVNKPDGKPVGRTIARVSDDGKTLTLNTTFGFDVHPDTIFAIERTDIAQQRYVVTGITKGDGDEEFTYNITAVEYDPNKYDEIDYGVNIDDRPTSIVQPDVLPAPENVKIESYSRVVQGASVETMHVSWDKVEYASLYEMQWRKDNGNWNNTPRTANKETEVEGIYAGNYHVRVRSVASNGSASGWSKIVSAELTGKVGEPEKPINLTASDDEVFGIRVKWGMPEGSGDTAYIELHQAPNGADGHPLVDQATLLTLVPFPQYEYWHSILPAGHVVWYKARSVDKIGNVSDWTDFVRGMASTDTSIITDHIKVDIENSEGYKWLEENAIKSNDKIHSAAESIIQNALANDTDVRRMRVENGKRKAEFLQSLKLIADETEARVTAVTQLSAQFDEKLTSQNSELREVIANASETLSQQINQLTATFEGEIDGVKQDISAQITEVNKAITNEAEARASADQALSTQIGDTQSAVNQKVDSWVNADSVGAMYGVKLGLRYNGQEYSAGMALSLVADGGGVKSQFLFDAGRFAIINNAQSGAFTLPFVVEGNQVYINSLLVKDGTITTAKIADQINSTNWSSGAAGWAINKGGYAEFNQVTVRGNVYASDGIFNGVIYARGGHFTGTVEAESFVGDVVNAGVGIDKEQLGSGGLSSTVVYTDSSGSATPKTAIFSAVCHMRGARSDKDTVVGVKVTINGVSRDFGGMFIPPAQEVFVPIHYAVQNITTQQVTATIELYNYSGLEGAVQKKIIAPTLQIARGSGSFTSY

Physico‐chemical properties

protein length:	1286 AA
molecular weight:	141558,56040 Da
isoelectric point:	4,87863
aromaticity:	0,09020
hydropathy:	-0,29953

Domain architecture

XRA11009.1

1 1286 aa

ATT 92–216 · ATT 339–487 · STR 625–719 · RBD 993–1129 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR053171
Unmapped

IPR053171 Coil IPR015406

IPR055385
ATT

IPR055385 IPR032876 IPR036116

IPR013783
STR

IPR013783

XRA11009.1

11286 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_0014
STR

DC_0014

XRA11009.1

11286 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR053171	Unmapped	-	3	876	InterPro	Viral Tip Attachment Protein	-	-	-	-
IPR055385	ATT	DC_0360	92	216	InterPro cluster	Tip attachment protein J, HDII-ins2 domain	N-terminal	High	Text match	1136 proteins / 1139 hits
IPR032876	ATT	DC_0307	339	487	InterPro cluster	Tip attachment protein J	Central	Medium	Text match	1111 proteins / 1112 hits
IPR036116	STR	IPR036116	625	714	Merged direct domain	Fibronectin type III superfamily	Central	Low	Positional only	52 proteins / 52 hits
IPR013783	STR	IPR013783	626	719	Merged direct domain	Immunoglobulin-like fold	Central	Low	Positional only	144 proteins / 144 hits
Coil	Unmapped	-	922	942	Coils	Coil	-	-	-	-
IPR015406	RBD	DC_0135	993	1129	InterPro cluster	Tip attachment protein J, central straight fiber domain	C-terminal	High	Text match	1265 proteins / 1266 hits

Proteins with similar domain architecture

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout

XRA11009.1

1 1286 aa

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	486	486	0,8681
Central domain	487	1026	541	0,0934
C-terminal	1027	1286	259	0,5559

Note: Constraints were applied during segmentation.
Fixed 47 C-terminal predictions appearing before Central domain

N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Phage

Salmonella phage vB_GS71 [NCBI] · taxon 3403489

Viruses Duplodnaviria Heunggongvirae Uroviricota Caudoviricetes

Host

Salmonella enterica subsp. enterica serovar Infantis [NCBI] · taxon 595

Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica

Genbank protein accession

XRA11009.1 [NCBI]

Genbank nucleotide accession

PV090992.1 [NCBI]

CDS location

range 23637 -> 27497
strand +

CDS

ATGGTTAAAAATATGATAACTGGCAGTAAGGGCGGTTCATCTAAACCGCATACACCTGTTGAAATGGAAGATAACTTGATTTCAATTAACAGGATCAGAATTCTTTTAGCTGTTTCTGATGGTGAAGTTGATCCAGACTTTTCATTGAAAGATTTATATTTTGATGACGTTCCGGTTATGAATCAGGACGGGTCACTAAACTTTCAGAATGTTAAAGCTGAATTCAGACCAGGCTCACAAACGCAAGATTATATTCAGGGATTCACTGACACGGCGAGTGAGATTACTGTTGCTCGCGATCTTACGGCTGCAACTCCTTATATTATTTCCGTGACTAATAAAAACCTTTCCGCGATCCGTATTAAAATTTTAATGCCGCGAGGGTTTACACAGGAGGATAACGGAGATTTAACAGGCGTTCGCGTTGAATACGCCGTTGATATGGCTATTGATGGTGCTGAATATAACGAGGTTTTGCATGATGTGATCGAAGGTAAAACAATGAGCGGTTACGACAGAAGCCGCCGAATTGATTTACCCGCATTCAATGAGCGTGTTTTATTGCGTGTTCGTCGCCTGACAGATAGCACGTCAGCAAGGGTTACGGATTTGATTAAGATGCAGAGCTACGCAGAAGTAGTAGACGCTAAGTTTCGTTATCCCATGACTGGTTTAGTTTACGTTGAGTTTGACAGTGAATTATTCCCTAATGCTTTGCCGAATATCAGCATTAAAAAGAAATGGAAAATCATTAATGTTCCGTCTAATTACGATCCGATTAGCCGCACATATTCAGGCTCTTGGGATGGAACTTGGAAAAAGGCATGGAGCAATAACCCTGCTTTTGTTCTGTATGATTTAATCACCAATCAGCGTTACGGACTCGACCAACGCGAATTAGGCATTGCGCTTGATAAGTGGAGTATTTACGAATGTGCGCAATATTGCGATCAGATGGTTCCAGATGGCAAGGGTGGAACAGAGCCGCGCTATCTATGCGACGTTGTGATCCAGAGTCAAGTAGAGGCTTATCAGCTTGTTCGTGATATTTGCTCAATCTTCCGAGGAATGAGTTTTTGGAATGGTGAGAGCCTTTCAATCGTAATCGACAAGCCGCGCGATCCGTCATACATCTTTACTAATGACAACGTGGTTAATGGTGAATTTACTTACACGTTTGCCAGCGAAAAGAGCATGTATACACAATGCAACGTGACTTTCGACGACGAACAAAACATGTATCAACAGGACGTTGAAGGAGTTTTTGAAACAGAGGCTGCGTTACGTTTTGGATATAACAGCACGTCAATAACTGCCATTGGATGCACCCGACGCAGTGAGGCTAATCGCCGTGGTCGCTGGATTCTAAAAACCAACGTTAAGAGCACAACAGTAAACTTTGCTACTGGCCTGGAAGGTATGATCCCAACGGTAGGCGATGTAATTGTTGTTTCGGATAACTTCTGGTCAAGCGCCTTAACGCTGAATCTATCAGGTCGCTTGATGGAGGTTAGCGGGTTGCAGGTGTTCACGCCGTTTAAGGTAGACGCAAGAGCAGGTGATCGCATTCTGGTAAATAAGCCGGATGGTAAGCCAGTTGGTAGAACCATTGCGCGTGTGAGCGATGACGGCAAAACGCTAACGCTAAACACAACGTTTGGCTTTGACGTTCATCCTGACACCATTTTTGCAATCGAAAGAACGGATATTGCACAGCAACGCTATGTTGTAACCGGAATCACTAAAGGTGATGGTGATGAAGAATTTACCTACAACATAACGGCTGTTGAATACGATCCGAATAAATACGATGAAATTGATTATGGTGTAAACATTGATGACCGTCCGACTTCAATCGTGCAGCCTGACGTATTGCCAGCACCTGAAAACGTCAAGATCGAATCTTATTCGCGAGTTGTTCAGGGCGCGAGCGTGGAAACAATGCACGTTTCATGGGATAAAGTTGAATACGCAAGTCTGTATGAAATGCAGTGGCGAAAAGACAATGGCAACTGGAACAATACGCCGCGAACCGCGAACAAGGAAACGGAAGTTGAAGGTATTTATGCGGGTAACTATCACGTCAGGGTTAGATCTGTTGCATCAAATGGTTCTGCTTCAGGATGGTCTAAGATCGTAAGTGCAGAATTAACAGGTAAAGTTGGGGAACCTGAAAAGCCTATTAATTTGACGGCTTCCGATGATGAGGTATTTGGTATTCGCGTGAAATGGGGTATGCCGGAAGGAAGCGGAGATACTGCTTACATAGAGTTACACCAGGCGCCAAATGGTGCTGATGGTCATCCACTTGTTGATCAAGCTACGCTATTAACGCTTGTTCCATTCCCTCAATATGAATACTGGCATTCAATACTGCCAGCGGGTCATGTTGTATGGTACAAGGCAAGGTCAGTAGATAAAATCGGTAACGTGTCTGATTGGACTGATTTTGTACGAGGAATGGCATCAACTGACACAAGCATTATCACAGATCACATTAAGGTTGATATTGAAAATTCGGAGGGATACAAATGGCTTGAAGAGAACGCTATTAAATCAAACGATAAGATCCACAGTGCAGCAGAATCAATCATTCAGAATGCGTTAGCGAATGATACTGATGTTAGACGTATGCGCGTAGAGAACGGCAAGCGCAAAGCTGAATTCTTGCAGTCGTTAAAACTGATTGCAGATGAAACGGAAGCGCGCGTGACGGCTGTTACTCAATTAAGCGCTCAATTCGACGAGAAATTAACGTCTCAAAATAGCGAATTGAGAGAGGTTATTGCTAATGCTAGTGAAACCCTTAGCCAACAGATTAATCAGCTTACAGCTACGTTTGAGGGCGAAATAGACGGTGTTAAGCAAGATATATCAGCACAAATCACGGAAGTGAATAAGGCGATTACCAACGAAGCAGAAGCGCGAGCGTCAGCAGACCAGGCTCTTTCAACTCAGATTGGAGATACCCAATCAGCGGTTAACCAGAAGGTTGATTCTTGGGTTAATGCCGATAGCGTAGGCGCGATGTACGGCGTTAAGTTGGGATTGCGTTACAACGGGCAGGAGTATAGCGCAGGTATGGCTCTTTCTCTCGTTGCTGATGGTGGCGGTGTTAAATCACAATTCCTGTTTGATGCAGGACGATTTGCGATCATCAATAACGCTCAGAGCGGCGCGTTTACTCTACCGTTTGTTGTTGAAGGTAATCAGGTATATATCAATAGCTTACTGGTTAAAGATGGGACAATTACCACGGCTAAGATTGCTGATCAGATTAACTCAACAAACTGGAGCAGCGGCGCGGCAGGTTGGGCCATTAACAAAGGAGGTTACGCTGAATTCAACCAGGTAACTGTAAGGGGCAACGTTTACGCAAGCGATGGTATTTTTAATGGAGTTATCTATGCTCGCGGAGGTCATTTTACAGGAACGGTTGAAGCAGAAAGTTTCGTTGGTGACGTGGTTAATGCTGGTGTTGGTATTGACAAGGAACAGCTTGGTTCTGGTGGGCTATCATCAACTGTTGTCTACACTGATAGTTCTGGATCTGCAACACCTAAGACTGCAATATTTTCAGCGGTTTGTCATATGAGAGGTGCACGAAGCGATAAGGATACAGTTGTTGGTGTGAAAGTAACAATAAATGGAGTTTCTAGAGATTTTGGTGGTATGTTCATACCTCCTGCACAAGAGGTTTTCGTACCAATTCACTATGCAGTGCAGAATATTACCACTCAGCAAGTAACTGCAACAATTGAGCTTTATAACTACAGCGGACTTGAAGGAGCGGTACAGAAGAAAATAATCGCGCCAACATTGCAGATTGCAAGGGGTTCAGGATCATTTACATCGTACTAA

Title	Authors	Date	PMID	Source
Characterization of lytic bacteriophages against Salmonella Infantis isolated from poultry farms in Ecuador	Castillo-Beckmann,I., Gomez-Cano,I.S., Debut,A., Ballaz,S., Sevilla-Navarro,S. and Fernandez-Moreira,E.	2025-09-22	—	GenBank

Protein

Domains

Tail Spike Domain Segmentation

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)

Literature