Protein

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Genbank accession
AFH20461.1 [GenBank]
Protein name
side tail fiber protein
RBP type
TF
Evidence RBPdetect
Probability 0,74
TF
Evidence RBPdetect2
Probability 0,96
Protein sequence
MLYNTGTIAINGNSATGTGTNWTAPASQVRAGQTIIVMSNPVQLFQISSVNSATSMTVTPAASPALSGQKYGILVTDSLSVDGLAQSMSQLINEYDENIGAWETFATTSANQNITVTINGARVTIPAIGKLVQKGSNGAVGVSDGGTGATNAADARTNLGLVKQTSIDDGTPGRLLTTEYSFGLGPAPRSTYPMGQGTQFLIYASTPSNGETPDSSLGCGVQVAYDSTRRAQYFIKTNGYFYSRFSLTSGILDASTAWNMHYTTKNTTKSSDGTLKAASPVARIVASQEACQRSDITEDGFSWCGCGTANAEAEGISISRLDVGVYTLTGSAGLASSGWQLLPPMDPGGMGELGVVEAEQAESGDLTIRLYKRKYILSDEGEIVKTKGELMDVPANSWIDVRLDMPESSAWNQRQKEAAEPAS
Physico‐chemical
properties
protein length:423 AA
molecular weight: 44381,82350 Da
isoelectric point:4,72994
aromaticity:0,06856
hydropathy:-0,21513

Domains

Domains [InterPro]
IPR058008
266–407
IPR058008
AFH20461.1
1 423
Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage HK633
[NCBI] 		1147147 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Escherichia coli
[NCBI] 		562 Bacteria > Proteobacteria > Gammaproteobacteria > Enterobacteriales > Enterobacteriaceae > Escherichia

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AFH20461.1 [NCBI]
Genbank nucleotide accession
JQ086377 [NCBI]
CDS location
range 19389 -> 20660
strand +
CDS
ATGCTTTATAACACTGGAACCATCGCCATTAACGGAAACAGCGCCACCGGCACGGGCACGAACTGGACGGCACCCGCCAGCCAGGTTCGCGCTGGCCAGACGATTATCGTGATGTCTAACCCGGTGCAGCTGTTTCAGATTTCATCCGTGAACAGCGCCACGTCAATGACGGTTACTCCAGCTGCTTCCCCGGCGCTGAGCGGCCAGAAGTACGGCATTCTTGTTACTGATAGTCTCTCGGTTGATGGCCTGGCGCAGAGCATGTCTCAGCTCATCAACGAGTATGACGAGAACATCGGCGCCTGGGAGACATTTGCCACCACCTCAGCAAATCAGAACATCACCGTTACCATCAACGGCGCTCGTGTAACCATTCCGGCGATCGGCAAACTGGTCCAGAAAGGGAGCAATGGGGCGGTTGGAGTTTCGGACGGCGGGACCGGGGCAACGAATGCCGCTGACGCTCGCACAAACCTCGGTTTGGTTAAACAGACTTCTATTGATGACGGCACACCGGGTCGATTACTTACTACCGAGTATTCCTTCGGGCTAGGACCAGCGCCCAGATCAACATATCCAATGGGTCAGGGAACACAGTTTTTGATTTATGCATCAACACCCAGCAACGGAGAGACTCCGGATTCTTCACTCGGTTGCGGCGTGCAGGTCGCATACGATTCTACAAGAAGGGCTCAATATTTCATAAAAACTAATGGATATTTTTATAGTCGGTTTTCACTAACATCAGGAATTCTTGATGCATCCACTGCGTGGAATATGCACTATACAACCAAGAATACTACTAAATCTAGCGATGGAACCCTTAAGGCTGCGTCTCCGGTTGCCCGTATTGTAGCGAGCCAAGAAGCCTGCCAGCGCTCAGATATAACTGAGGATGGTTTCTCCTGGTGCGGCTGCGGTACGGCGAATGCAGAAGCTGAAGGTATCAGCATATCTCGTCTTGATGTAGGTGTTTATACGCTTACCGGTTCAGCAGGCCTGGCTTCTTCTGGCTGGCAACTCTTACCACCTATGGATCCTGGTGGTATGGGGGAGCTAGGTGTCGTTGAGGCAGAGCAAGCCGAAAGCGGCGACCTGACGATTCGCCTGTATAAACGCAAATATATCCTAAGCGATGAAGGTGAGATCGTCAAAACCAAAGGTGAATTGATGGACGTGCCGGCGAACAGTTGGATCGATGTGCGTCTCGATATGCCTGAAAGCAGTGCCTGGAATCAGCGTCAGAAAGAGGCGGCTGAGCCTGCTTCGTAA

Tertiary structure

PDB ID
274fd080c8b0e809518667b718b196b78bbce97f107acfd085397cb54fb0148f
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8193
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The genomes of several lambdoid coliphages Refardt,D., Gencoglu,M., Kunzli-Gontarczyk,M., Bruggmann,R. and Kropinski,A.M. 2012-04 — GenBank