Protein

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Genbank accession
UCS82784.1 [GenBank]
Protein name
non-contractile tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,89
TF
Evidence RBPdetect2
Probability 0,96
Protein sequence
MANVIKTVLTYPLNGSNRDFNIPFEYLARKFVVVTLIGVDRHVLTLNNDYRFATRTTISTNKAWGPADGYTTIEIRRVTSATERLVDFTDGSILRAYDLNVAQIQTMHVAEEARDLTADTIGVNNEGHLDARGRRIVNVANAVDDRDAVPLGQLKGMNEGAWQARNQAQQFRNEAENFKNAAQASAQNAAGSNQSANQHRDDALRFRNEAEAFKNSASTSANTASNAMREAETSAQNAAGSNQAAINSATKAKNEADRAEREASKLANFNDFAAAVENVQDNNVWMKGNFIVRKGITATTGFSVAGGGAVIHGNSAINGATTVNGYLIVNPYEGSTEGGEIRLYGKTKERTGGFIDVDANDNLRVVKDGANGGVKMSFDTNGRVTCHTVLQVNADMTATGKVQAGGGSSYLAPDGNIFGPVWSGGSVHAHMGNNYRRKNAGWIQIRAGACPVNVDIGLGRSVKWHTIWLLGQDAWCPVNIGDDSIYYISFYGGWWRFQIHSNGTVFKLLNHNGPVPAAIIVDNE
Physico‐chemical
properties
protein length:524 AA
molecular weight: 56607,06570 Da
isoelectric point:6,84770
aromaticity:0,08015
hydropathy:-0,39103

Domains

Domains [InterPro]
IPR005604
ATT
1–131
IPR005604 Coil Coil G3DSA:2.60.320.30
DC_0264
STR
1–522
DC_0264
UCS82784.1
1 524
Architecture
ATT
STR
ATT 1-131 | STR 132-522 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
UCS82784.1
1 524
Domain Start End Length (AA) Confidence
N-terminal 1 173 173 0,9581
Central domain 174 374 202 0,5566
C-terminal 375 524 149 0,8447
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-173
Central
174-374
C-terminal
375-524

Taxonomy

  Name Taxonomy ID Lineage
Phage Yersinia phage vB_YenP_Rambo
[NCBI] 		2880894 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Yersinia enterocolitica
[NCBI] 		630 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
UCS82784.1 [NCBI]
Genbank nucleotide accession
OK042080.1 [NCBI]
CDS location
range 33781 -> 35355
strand +
CDS
ATGGCTAACGTTATCAAGACCGTTTTGACTTACCCGCTTAATGGTTCGAATAGGGACTTCAATATCCCGTTTGAGTACCTAGCGCGTAAGTTCGTTGTGGTAACTCTTATCGGTGTTGACCGACATGTTTTAACTCTTAATAATGACTATCGATTTGCGACTCGTACCACCATCTCTACGAATAAAGCGTGGGGGCCAGCCGATGGGTACACTACTATCGAGATTCGTCGAGTAACCTCTGCGACTGAACGCTTGGTAGACTTTACGGATGGTTCTATTCTACGTGCGTATGACCTTAACGTTGCTCAGATTCAGACCATGCATGTTGCTGAGGAAGCTCGCGACTTGACTGCGGATACTATCGGCGTGAACAATGAGGGACATTTGGACGCTCGTGGTCGCCGTATTGTGAACGTAGCGAACGCAGTTGATGATCGTGACGCTGTTCCGTTAGGACAACTTAAGGGTATGAATGAGGGTGCGTGGCAAGCTCGTAATCAGGCCCAACAATTCCGTAACGAAGCAGAGAACTTTAAGAACGCTGCTCAGGCAAGCGCTCAGAATGCCGCTGGGTCTAACCAATCAGCTAACCAACATCGTGATGATGCTTTAAGGTTCCGTAATGAGGCCGAAGCGTTTAAGAACTCTGCAAGTACCAGTGCGAATACTGCGAGTAACGCTATGAGAGAAGCTGAGACTTCCGCTCAGAATGCTGCTGGTTCTAACCAAGCTGCAATCAACAGCGCAACTAAAGCTAAGAATGAGGCTGATAGGGCTGAACGTGAAGCATCTAAATTGGCTAACTTCAATGACTTTGCGGCTGCCGTTGAGAACGTTCAGGATAACAATGTCTGGATGAAAGGTAACTTCATTGTGCGTAAGGGCATTACTGCTACCACAGGTTTCAGCGTTGCAGGTGGTGGTGCGGTTATTCATGGGAATTCCGCAATAAACGGTGCGACCACTGTCAACGGCTACCTGATAGTTAACCCTTATGAAGGCTCAACTGAGGGTGGCGAGATTCGATTGTATGGTAAGACTAAGGAGCGAACCGGTGGTTTTATCGATGTAGATGCGAATGATAATCTTCGTGTTGTCAAAGATGGTGCGAACGGTGGAGTGAAGATGTCGTTTGATACCAATGGTAGGGTAACTTGTCATACTGTATTGCAGGTGAACGCTGATATGACTGCGACAGGAAAGGTTCAAGCAGGTGGCGGGTCATCTTACTTGGCTCCTGATGGTAACATCTTCGGGCCTGTCTGGTCTGGTGGTAGTGTACATGCCCATATGGGAAATAACTACCGTAGAAAGAATGCGGGGTGGATACAAATACGAGCAGGAGCGTGTCCAGTCAACGTCGATATCGGACTTGGTAGAAGCGTGAAATGGCACACTATATGGCTATTAGGTCAAGACGCATGGTGTCCTGTGAATATTGGTGATGACTCCATTTACTATATTTCATTCTACGGTGGATGGTGGCGATTCCAAATTCATTCCAATGGGACTGTGTTCAAGCTTCTGAACCACAATGGGCCTGTTCCTGCTGCTATTATTGTGGACAACGAGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
bbb3884298e684710aee8818943dc6a9d0c238a8e65100d87983eb2814855015
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6933
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Properties of two broad host range phages and the first virulent siphovirus of Yersinia enterocolitica isolated from wild animals Hammerl,J.A. and Hertwig,S. 2021-10-21 — GenBank