Phage RBP Database

Genbank accession

QDJ97279.1 [GenBank]

Protein name

hypothetical protein

RBP type

TSP

Evidence DepoScope

Probability 1,00

TSP

Evidence RBPdetect2

Probability 0,82

Protein sequence

MYVDKDKPQPPLDERTDPVGVVLEAFIENDRKVQEVTGDIVDTIKDIQNAQTSATQKLDKFDADVKAKLKTHVDKRGAIHGESKHTVGLGNKDNYPMATMQEHVDGKALAYAHPSGLRELVESRVKSDPTKYIPARVIPLASGGMLGEIPQYHMDLSIGELDQSKQDPNLHLGETPWEFSTTSGALIFPTINNAPHHGRYTQVPQGMNVFSHGPHGGTKIRVYNKTLDSRRTRPSFIRGWGDASGAPEQLGTCVKAGSSLFDKTHVIYREVNWLLRSFNKNALPSDVVEIYKHYSKEPEGIFEYAEGFLFNYWVTPLNAIVPGGSVAEPHIKLDMRCFKMDVADYRAAQGAVSLNGEQRSSLGDTTQTFSATVPAHNKMVFGGQAGSGVGSIYIRLNRLLTLPGGMENAFLANLNQDLVRQLTFAWRNRMSYHGLFRIPVGWWNKQKTKYWHAWVDFEIIDRPFYTGLNNQLRVLTADPSWNAVQTVDANWNVTGSGMFKEYRADIKDNPMHPLALGGIFESQGGHMKTYTLYGRQYTAYHQHDMGQSLDFITKGNVPLPPPTQSEYSARSTLNGTGLYGDHLRHIPVDIDQQTGLVTYLTHVRDYRDRYRWARVVIDGEQEVVQDRFYGNYLGPKVQKLDWLPGIKTPRPFVISNDDFQPTMNINGLVFTAENKFLGFGSFRTNEANQDYLEYVDEIRLDEQVIAWVKSNAGGFTNPDLLFFYFRGSLFWFCRCSDPAEYPADGKDCYYGVIKDCGVKLDGGGARVMGPNGSIADSITINKFNLMTKNSLLVDQAEVYGIDSLSGRDVYIMMTQHHNDSGTQDHDVMVNMGPFNNFYIEMKLIRSGDGAMTFRPKPEAIDPVFPYTESNGFQIDYDAHTLYGTKIPERFHVNYQSPVMLKKGMWSYRKTPNNFGFFTRRHGFITITGCVMASYYGTDVYPMGSVLTVSGKNTVVKKPVQYSPDDIDGNSELSVRIVGDEPVLYGTNFNPNGYEVEPHNGAAPAGWGSGSNFYYYDPASWRNTFMPVIDGRRMSWYGYGSTVPVLLGKPGEGLPINRYYFGTQSTQMTWDTAKGRVVKFDTEIATTVAVNGNAEVTGSATQYVIPAQYTGVVTIDLYNANKLIWAPGLTNLIRLGSEIMEVDFSGSDQFTISAPLPKRVTSLKRAFYKAKGASYPGLQNWNVTGVTDFTECFAETTAFNQDLSRWTFVMGRTLRGMFQNAVAFNQPVPGTWFQYILDCSYMFAGSGAFNKPLTGTALQCKTAIGMFQGSKAFNSSIDGLKFLEIVDISDFFRESVVFNQSINGFDVSKVERAERMFQGAKGFLQPITLNMKQCHSVSGMFKDNLVFNALVNISLPICTDFSQMFMGTKLFNQKLPAWSFSPRTTLREMFSGSKAYNQSMDHWMMERVASISRMFQFAAAYQQPIKTWTFYKLVDCSYLFANSSFNADVNDIKWPSDPTLGINATGIFYYNLVYNQPLSKWNTVAFKLFNGIFNLARSFNQDISAWNVSNGENFENLFKDAIEFDGDISNWDVGKSKTFSYFAANAVKFKSDLSKWNVSSCFNFEAMFKHCLVFDSDISEWDVSNGTTFEWMFDGYSLTETVTPEYFMIFNQDLSKWNVGKGVRFNAMFRKCQLFTSDLSGWDMTNAQEAGAMFQHCYEFQSELASWKVAKFTHVRYMFFHAHNFNAPIPDWDVSRCTDFEQMFSYTYMFNQDLSNWDMSNARNLNRMFDVAAVFNGDVSTWDVSNVVTFWGMFRDAAEFNGDISGWVTSSANDFSGMFQDAVSFDRDLSGWDVSKGIKFNAMFRSTKCNFGMNNWNVGNATTFAEMFKGNIVFNQKLSTWKTGKVTDMGQMFSGCKALTDPGIGNWDTGRVELMNQMFFDCPLFNSNISGWNVSNVTNFSRMFMSALKFNANLSTWNVSNGVIFEKMFHTAELFNQPLNTWRMVKGEDFTDMFYGAKAFNQPINDWGMASAKTLNGMFRGSSVFNQPLDKWNTGNVVNMDSTFRDAKQFNQNLSIWNVAKVTSHADFDTGATAWTEPRPNFV

Physico‐chemical properties

protein length:	2042 AA
molecular weight:	230551,31540 Da
isoelectric point:	6,13090
aromaticity:	0,13663
hydropathy:	-0,33991

Domain architecture

QDJ97279.1

1 2042 aa

STR 1151–1253 · STR 1264–1348 · STR 1358–1449 · STR 1464–1552 · STR 1608–1687 · STR 1709–1807 · STR 1861–1966 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR005046
STR

IPR005046 IPR005046 IPR005046 IPR005046 IPR005046 IPR005046 IPR005046 IPR011889

IPR011889
Unmapped

IPR011889

QDJ97279.1

12042 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_0481
STR

DC_0481 DC_1384 DC_0103 DC_1935

DC_1935
STR

DC_1935 DC_0103 DC_1935 DC_1935

QDJ97279.1

12042 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR005046	STR	DC_0253	1151	1253	InterPro cluster	Protein of unknown function DUF285	Central	Low	Positional only	37 proteins / 182 hits
IPR005046	STR	DC_0253	1264	1348	InterPro cluster	Protein of unknown function DUF285	Central	Low	Positional only	37 proteins / 182 hits
IPR005046	STR	DC_0253	1358	1449	InterPro cluster	Protein of unknown function DUF285	Central	Low	Positional only	37 proteins / 182 hits
IPR005046	STR	DC_0253	1464	1552	InterPro cluster	Protein of unknown function DUF285	Central	Low	Positional only	37 proteins / 182 hits
IPR005046	STR	DC_0253	1608	1687	InterPro cluster	Protein of unknown function DUF285	Central	Low	Positional only	37 proteins / 182 hits
IPR005046	STR	DC_0253	1709	1807	InterPro cluster	Protein of unknown function DUF285	Central	Low	Positional only	37 proteins / 182 hits
IPR005046	STR	DC_0253	1861	1966	InterPro cluster	Protein of unknown function DUF285	Central	Low	Positional only	37 proteins / 182 hits
IPR011889	Unmapped	-	1877	1900	InterPro	Bacterial surface protein 26-residue repeat	-	-	-	-
IPR011889	Unmapped	-	1977	2001	InterPro	Bacterial surface protein 26-residue repeat	-	-	-	-

Proteins with similar domain architecture

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout

QDJ97279.1

1 2042 aa

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	120	120	0,9641
Central domain	121	734	615	0,9718
C-terminal	735	2042	1307	0,0285

N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Phage

Aeromonas phage D6 [NCBI] · taxon 2593322

Uroviricota Caudoviricetes Chimalliviridae Ludhianavirus D6

Host

Aeromonas hydrophila [NCBI] · taxon 644

cellular organisms Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Aeromonadales

Genbank protein accession

QDJ97279.1 [NCBI]

Genbank nucleotide accession

MN131137 [NCBI]

CDS location

range 119945 -> 126073
strand +

CDS

ATGTATGTAGATAAGGATAAACCCCAACCCCCACTGGACGAGCGTACCGATCCGGTAGGGGTCGTACTTGAAGCGTTCATTGAGAACGATCGTAAGGTACAAGAGGTTACGGGTGATATCGTTGACACGATAAAAGACATCCAGAATGCACAGACGTCAGCCACTCAGAAACTTGACAAGTTTGATGCCGACGTTAAGGCAAAACTTAAAACCCACGTTGATAAACGCGGTGCGATTCACGGAGAGAGTAAACACACAGTAGGATTGGGGAACAAGGATAACTACCCAATGGCTACAATGCAGGAACATGTGGACGGTAAGGCTCTAGCTTATGCACACCCCTCCGGTCTCCGCGAGTTGGTGGAATCCAGAGTGAAAAGTGATCCTACCAAGTATATTCCTGCGCGAGTAATACCTCTGGCTTCCGGTGGGATGTTGGGTGAAATTCCTCAGTACCACATGGATTTGAGTATTGGTGAACTCGACCAATCCAAACAGGACCCCAATCTTCATTTAGGGGAAACCCCTTGGGAATTTAGCACCACCTCAGGCGCTCTGATATTCCCCACAATCAACAACGCACCTCACCATGGGCGATACACCCAAGTTCCCCAAGGAATGAACGTGTTCAGTCATGGACCCCATGGTGGGACAAAAATCCGAGTCTACAATAAGACCCTGGATAGCCGAAGAACACGCCCGTCGTTTATTCGTGGTTGGGGTGATGCTTCAGGTGCTCCCGAGCAATTAGGGACCTGTGTCAAAGCGGGGAGTTCGCTCTTCGACAAGACGCACGTTATTTATCGCGAAGTCAACTGGTTGCTTCGGTCCTTTAACAAAAATGCGCTCCCCTCCGATGTGGTAGAGATATACAAGCACTATTCGAAAGAACCAGAAGGTATCTTCGAGTACGCAGAGGGATTTCTCTTTAACTATTGGGTAACACCCCTCAACGCTATCGTCCCCGGCGGATCAGTTGCCGAACCACATATCAAGCTGGATATGCGGTGCTTTAAAATGGACGTGGCTGATTACCGTGCCGCCCAAGGAGCGGTCAGTCTGAATGGGGAACAGCGGTCATCCCTGGGGGATACCACTCAAACGTTCTCTGCGACGGTACCTGCGCACAACAAAATGGTTTTTGGAGGTCAAGCTGGTTCCGGGGTAGGTTCTATTTATATCAGGCTGAATCGTCTTTTGACACTCCCTGGCGGGATGGAGAATGCGTTTCTTGCCAATCTGAACCAAGACCTCGTGCGACAGTTAACCTTCGCGTGGCGCAATCGCATGAGTTACCACGGTCTGTTCAGGATCCCTGTAGGTTGGTGGAACAAACAAAAAACTAAATACTGGCACGCCTGGGTCGATTTCGAGATTATCGATCGTCCTTTCTATACTGGGCTCAATAACCAGCTTCGTGTGTTAACAGCAGATCCGTCTTGGAACGCAGTCCAGACTGTCGACGCCAACTGGAACGTGACCGGGTCAGGAATGTTCAAAGAGTACCGCGCCGACATCAAAGATAACCCGATGCACCCCTTGGCGCTCGGTGGCATCTTCGAATCCCAAGGCGGGCACATGAAGACCTATACCTTGTATGGAAGACAGTACACTGCCTACCATCAACACGACATGGGTCAATCGCTGGATTTCATCACTAAGGGTAACGTCCCTCTTCCTCCCCCGACCCAGAGCGAGTACAGTGCCAGGTCCACCTTGAACGGTACCGGTCTTTATGGGGACCACCTCCGACACATTCCTGTCGATATCGACCAACAGACCGGTTTGGTGACGTACCTTACTCACGTTCGCGATTATCGTGATCGTTATCGGTGGGCCCGTGTGGTCATCGATGGAGAACAGGAAGTCGTCCAGGACAGGTTCTACGGGAACTACCTTGGTCCCAAAGTCCAGAAATTGGACTGGCTCCCAGGGATCAAAACACCCAGACCGTTCGTTATTTCCAACGATGACTTCCAACCCACGATGAACATCAACGGGTTGGTCTTTACAGCCGAAAACAAGTTTCTTGGCTTTGGTAGTTTCAGAACCAATGAAGCTAACCAGGATTACCTTGAATACGTTGACGAGATTCGACTGGACGAGCAAGTTATTGCTTGGGTGAAGAGTAATGCCGGTGGGTTTACCAACCCTGATTTACTCTTCTTCTATTTCAGGGGGAGTTTGTTCTGGTTCTGTCGTTGTTCCGATCCGGCTGAATATCCGGCTGATGGAAAAGATTGTTACTACGGCGTAATAAAGGACTGTGGTGTCAAACTCGATGGTGGTGGTGCCCGTGTCATGGGTCCGAATGGTTCTATCGCTGATTCAATCACGATTAACAAATTCAACTTAATGACCAAAAATAGTTTACTGGTCGATCAAGCGGAAGTTTACGGGATAGATTCCCTCTCCGGTCGTGATGTTTACATCATGATGACTCAACATCATAACGATTCAGGAACCCAAGATCATGACGTAATGGTCAACATGGGTCCTTTCAACAATTTCTATATTGAAATGAAGTTGATACGTTCTGGTGATGGCGCCATGACGTTTAGACCGAAGCCAGAGGCGATCGATCCGGTATTCCCTTACACAGAGAGTAATGGTTTCCAAATAGACTATGACGCACACACTCTGTACGGGACAAAAATTCCGGAAAGATTCCACGTAAACTACCAGTCCCCCGTGATGTTGAAGAAAGGGATGTGGAGCTACCGTAAAACCCCCAATAACTTTGGGTTCTTTACACGTCGACATGGGTTCATTACGATAACCGGTTGTGTGATGGCCAGTTACTATGGGACAGACGTTTATCCCATGGGATCAGTCCTCACGGTTTCCGGGAAGAACACAGTGGTTAAGAAGCCGGTCCAGTATAGTCCCGACGACATCGATGGAAATTCGGAACTGTCCGTCAGAATAGTGGGTGATGAGCCTGTACTCTACGGTACGAATTTTAATCCCAATGGTTACGAGGTAGAACCACATAACGGCGCTGCCCCAGCTGGTTGGGGGTCTGGTTCGAACTTCTATTATTACGACCCGGCTAGTTGGAGAAATACTTTCATGCCGGTGATAGATGGACGGCGGATGAGTTGGTATGGTTACGGTTCGACTGTACCCGTTCTTCTGGGGAAACCTGGGGAAGGACTTCCTATCAACAGGTATTACTTTGGAACCCAAAGTACCCAGATGACCTGGGACACCGCTAAAGGAAGGGTGGTGAAGTTTGATACCGAAATAGCCACCACTGTGGCTGTAAACGGAAACGCAGAAGTGACCGGAAGTGCTACGCAGTATGTTATCCCTGCACAGTACACCGGGGTGGTGACAATCGACCTTTATAACGCCAATAAACTCATCTGGGCACCAGGACTGACAAACCTGATCCGGTTGGGGAGCGAAATAATGGAGGTTGACTTCTCTGGTTCAGACCAGTTTACGATTTCGGCCCCGTTACCAAAACGTGTCACCAGTCTGAAACGTGCGTTCTATAAAGCTAAGGGTGCGAGTTATCCTGGGCTTCAAAATTGGAACGTGACGGGCGTCACCGACTTCACCGAGTGTTTTGCTGAAACCACCGCATTCAACCAAGATCTTAGTAGATGGACCTTCGTTATGGGGAGGACGTTGCGAGGGATGTTCCAGAACGCTGTGGCATTCAACCAACCTGTTCCCGGAACTTGGTTCCAATACATCCTGGATTGTTCCTACATGTTTGCTGGTTCCGGTGCGTTTAACAAACCTCTAACTGGAACCGCGTTACAGTGTAAAACAGCCATCGGTATGTTCCAAGGCTCCAAAGCGTTCAACTCCAGTATTGATGGACTCAAGTTCCTGGAAATTGTGGATATCTCTGATTTCTTCAGGGAGTCGGTCGTTTTCAACCAATCCATAAACGGATTTGACGTTTCGAAGGTTGAGCGCGCGGAAAGGATGTTCCAAGGTGCGAAAGGGTTCCTCCAACCCATCACACTCAACATGAAACAATGTCATTCAGTGTCAGGGATGTTCAAAGATAACCTTGTGTTTAATGCACTTGTGAATATCTCGCTCCCTATCTGTACTGACTTCAGCCAAATGTTCATGGGGACCAAGCTGTTCAACCAGAAATTGCCTGCATGGTCATTTAGCCCCAGGACGACATTGCGAGAAATGTTCAGCGGGTCCAAAGCCTACAACCAGTCAATGGACCATTGGATGATGGAACGTGTCGCGTCCATTTCCAGAATGTTCCAGTTCGCCGCTGCTTACCAGCAACCTATCAAGACCTGGACCTTCTATAAGTTGGTTGACTGTTCTTACCTGTTCGCTAATTCCTCGTTCAATGCGGATGTCAATGATATAAAGTGGCCAAGTGATCCAACCCTGGGGATTAACGCCACTGGTATCTTCTATTACAATTTGGTTTATAACCAACCACTGAGTAAATGGAATACCGTTGCATTCAAATTGTTCAATGGTATCTTTAATCTGGCAAGATCGTTTAACCAAGACATTTCAGCCTGGAATGTCTCCAATGGTGAAAACTTTGAAAACCTCTTTAAAGACGCAATTGAGTTCGATGGGGACATTTCCAACTGGGATGTGGGTAAATCCAAAACGTTCTCTTACTTCGCAGCGAATGCCGTCAAGTTCAAATCCGACCTTTCCAAGTGGAACGTGAGCTCTTGTTTCAACTTCGAAGCGATGTTCAAACACTGTTTGGTTTTCGATAGCGATATCTCTGAATGGGATGTCTCCAACGGTACCACTTTCGAGTGGATGTTCGATGGATATTCGTTAACCGAAACTGTCACACCTGAATACTTTATGATCTTCAACCAAGATCTGAGTAAATGGAACGTTGGAAAGGGTGTTCGCTTTAATGCCATGTTCCGTAAGTGTCAATTGTTCACGTCTGACCTTTCTGGGTGGGATATGACAAACGCGCAAGAAGCCGGTGCGATGTTCCAACATTGCTACGAGTTCCAGTCGGAACTTGCTTCTTGGAAAGTGGCAAAATTCACTCATGTTCGTTACATGTTCTTCCACGCCCACAACTTCAACGCTCCTATCCCTGATTGGGACGTGTCAAGGTGTACTGACTTTGAACAGATGTTTAGTTACACCTACATGTTCAACCAGGATTTGAGCAACTGGGATATGAGCAATGCCAGAAACCTCAATAGGATGTTCGATGTTGCGGCGGTCTTCAATGGCGATGTTTCTACTTGGGATGTTTCCAATGTAGTGACATTCTGGGGAATGTTCAGGGATGCGGCGGAGTTCAATGGCGATATCTCTGGTTGGGTTACATCCAGTGCGAATGATTTCAGTGGTATGTTCCAAGACGCGGTCTCGTTTGATCGGGATTTGAGTGGATGGGATGTCTCCAAGGGGATCAAGTTCAATGCGATGTTTAGGTCGACCAAGTGTAATTTCGGTATGAACAACTGGAACGTGGGTAACGCCACTACCTTTGCCGAAATGTTCAAGGGGAACATTGTCTTTAACCAGAAACTGTCTACTTGGAAAACAGGTAAAGTTACTGATATGGGACAGATGTTCTCTGGGTGTAAAGCACTGACTGATCCGGGAATCGGTAATTGGGATACTGGACGCGTGGAACTCATGAATCAGATGTTCTTCGACTGTCCTCTTTTCAATTCCAATATCTCTGGTTGGAACGTATCCAATGTGACAAACTTCTCCAGGATGTTTATGAGTGCGCTTAAGTTCAACGCTAACTTGTCGACCTGGAATGTTTCCAACGGTGTAATATTCGAGAAAATGTTCCACACGGCGGAACTCTTTAACCAACCTCTGAATACTTGGAGAATGGTGAAAGGTGAAGATTTCACAGATATGTTCTATGGTGCGAAAGCGTTCAACCAACCCATCAATGACTGGGGTATGGCCAGCGCCAAGACACTCAACGGGATGTTCCGTGGTTCCTCTGTGTTCAACCAACCTCTGGATAAATGGAACACGGGCAATGTTGTCAATATGGACTCGACCTTCCGTGATGCCAAACAGTTCAACCAGAATCTGAGTATCTGGAATGTCGCTAAGGTGACATCCCATGCTGACTTCGATACTGGAGCGACTGCTTGGACCGAGCCACGTCCTAACTTTGTTTAA

Title	Authors	Date	PMID	Source
Complete genome sequence of Aeromonas hydrophila bacteriophage D6	Rai,S., Tyagi,A., Kumar,N. and Singh,N.	2020-06-10	—	GenBank

Protein

Domains

Tail Spike Domain Segmentation

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)

Literature