Phage RBP Database

Genbank accession

AFZ77620.1 [GenBank]

Protein name

gluconolaconase

RBP type

TSP

Evidence DepoScope

Probability 1,00

TSP

Evidence RBPdetect

Probability 0,91

TSP

Evidence RBPdetect2

Probability 0,97

Seq2Symm

C3 confidence 1,000

C3	1,000
C1	0,015
D3	0,000

Predicted homo-oligomer symmetry (Seq2Symm, per-class probabilities; C1 = monomer, C2 = dimer, C3 = trimer).

Protein sequence

MTIIKRADLGRPLTWDELDNNFQQVDDLTAAASAAVSSASASAAAAASSATASANSALDAANSASNAATAIVSAVKSTVTFTTGGTLNSNLDRISDGTYLYYWTGTYPVTVPAGSTVAGTGGIAVGFWAVDSDQILRDNLSATEGFGLIGACPDIATLRTVEPVTDGQRITMSWGSVYYHDASDTTSEDLSGGVVVTTGGKRWKLKNNGNISFIEWEPVADGTTDNAWKLQQACLFAQSLGGASIYIPPTTSGYLMTYPVHLFDNVEVYGAGRGSRIIFQDPIFNKGRGGFVMGSSVEANRDTTLANYRAGTYPAASTENTSFVNPTLGTFLRDNQSFVQITGAKIHDLYLVATYTGTNTHGGYGINFVNAQNCVAYNIWGGGDGWTQLIGMGSDTPPETPSCYNCHAWNLHVDKPNQVRTFYSVGFISNSTDCSIDKMWQHSSYPADIDHGSCVATNVVENCSITNMNVPNLGLSNTAEGVLLNNSKGCTVSNINVRNCKRTVATFYTNVSYLDSTKPNYISNVSGQATVALISVASKYDIFSDFNADSTTPYDILFANVNASGNIVRNEPASFGVIESATVFFRQYLQNNTVKGYLRRYKYLRPADILTNSKSDTTAWSYGKIVRTKASTDLHFLWEVPASFKALDTISLFCSFNANGDAAFTAGSTIRAELIQMVAFDGNISTAPYSAFSNTRVATTGQTDTTLTAQYSTSVSPGLVKMTDTTNGLDNSWYVHLYMYNNVIDNYMKEIRISYWG

Physico‐chemical properties

protein length:	757 AA
molecular weight:	81423,39830 Da
isoelectric point:	5,14077
aromaticity:	0,10700
hydropathy:	-0,13897

Domain architecture

AFZ77620.1

1 757 aa

ATT 75–142 · STR 219–607 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR040775
RBD

IPR040775 IPR012334

G3DSA:2.10.10.80
ATT

G3DSA:2.10.10.80 IPR011050

AFZ77620.1

1757 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_0018
ATT

DC_0018 DC_0117

AFZ77620.1

1757 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR040775	RBD	DC_0821	72	129	InterPro cluster	Tail spike TSP1/Gp66, N-terminal domain	Central	High	Text match	1281 proteins / 1285 hits
G3DSA:2.10.10.80	ATT	G3DSA:2.10.10.80	75	142	Merged direct domain	G3DSA:2.10.10.80	N-terminal	Low	Positional only	383 proteins / 383 hits
IPR012334	STR	IPR012334	219	607	Merged direct domain	Pectin lyase fold	Central	Low	Positional only	867 proteins / 867 hits
IPR011050	STR	IPR011050	219	566	Merged direct domain	Pectin lyase fold/virulence factor	Central	Low	Positional only	572 proteins / 572 hits

Proteins with similar domain architecture

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout

AFZ77620.1

1 757 aa

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	224	224	0,9896
Central domain	225	582	359	0,9911
C-terminal	583	757	174	0,9736

N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Phage

Klebsiella phage JD001 [NCBI] · taxon 1236000

Uroviricota Caudoviricetes Jedunavirus Jedunavirus JD001

Host

Klebsiella pneumoniae [NCBI] · taxon 573

Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae

Genbank protein accession

AFZ77620.1 [NCBI]

Genbank nucleotide accession

JX866719 [NCBI]

CDS location

range 44376 -> 46649
strand -

CDS

ATGACCATTATCAAACGCGCAGACCTGGGTCGACCCTTAACGTGGGACGAACTGGACAACAATTTCCAGCAGGTCGATGATTTGACAGCCGCCGCATCAGCGGCCGTATCGAGTGCATCGGCTTCAGCTGCAGCCGCTGCGAGTAGCGCCACAGCATCCGCAAACAGCGCATTAGATGCAGCTAACTCCGCGTCTAATGCTGCCACAGCAATTGTGAGCGCTGTTAAGAGCACTGTCACTTTCACGACTGGTGGTACTTTGAACAGTAATCTTGACCGTATCAGTGACGGTACTTATCTGTATTACTGGACGGGTACTTATCCTGTGACCGTACCGGCTGGTTCCACGGTTGCGGGTACGGGTGGTATTGCTGTTGGGTTTTGGGCGGTAGACAGTGACCAGATATTGCGTGACAATCTCAGCGCTACAGAGGGGTTTGGTCTGATTGGGGCTTGTCCGGATATCGCAACTCTACGCACCGTTGAACCGGTGACAGACGGACAGCGAATCACCATGTCGTGGGGGTCTGTCTACTATCACGATGCGTCCGATACTACAAGTGAAGACCTGTCAGGGGGTGTGGTTGTTACCACAGGAGGAAAGCGGTGGAAATTAAAAAACAACGGTAATATCTCATTTATTGAATGGGAACCTGTAGCCGATGGTACTACTGATAATGCGTGGAAACTCCAGCAAGCGTGTTTGTTTGCTCAGAGTTTGGGTGGTGCATCTATTTATATCCCACCGACAACCAGTGGCTACCTGATGACATACCCGGTTCATCTCTTCGACAATGTCGAAGTATATGGTGCCGGTAGAGGTTCAAGAATTATATTTCAAGACCCAATATTCAACAAAGGCCGCGGTGGATTTGTTATGGGGTCATCCGTGGAGGCTAACAGAGATACAACACTGGCGAATTATCGCGCTGGTACTTACCCTGCTGCGTCCACCGAAAACACATCATTTGTAAACCCAACCCTCGGAACATTTCTTCGTGACAACCAGTCTTTTGTACAAATTACTGGGGCTAAGATTCACGATTTGTATTTAGTTGCCACATATACCGGAACAAATACACACGGTGGTTACGGTATCAATTTTGTTAACGCACAGAATTGTGTTGCGTATAACATATGGGGTGGTGGTGACGGATGGACTCAGTTGATAGGTATGGGGTCTGATACTCCACCCGAAACTCCATCGTGCTATAACTGTCACGCTTGGAACTTACATGTCGATAAGCCTAACCAGGTAAGGACTTTTTACAGCGTTGGCTTTATTTCCAATAGTACGGATTGTTCCATCGATAAAATGTGGCAACACAGCTCTTATCCTGCGGATATTGACCACGGCTCATGCGTTGCTACAAATGTTGTTGAAAACTGCTCAATTACAAACATGAACGTACCCAACCTTGGGCTGTCTAATACTGCTGAGGGTGTTTTACTCAACAATTCGAAAGGGTGTACAGTTTCCAACATCAATGTGAGAAACTGCAAACGCACGGTTGCGACCTTCTACACGAATGTATCATATCTGGATTCGACCAAACCCAACTACATTAGTAATGTGAGCGGACAAGCAACCGTAGCGTTGATTTCTGTAGCGTCAAAATACGATATTTTTTCCGATTTTAACGCCGATAGTACAACGCCTTATGACATCTTGTTCGCTAACGTGAACGCCAGTGGTAACATCGTGCGGAACGAACCAGCATCATTCGGTGTGATTGAGAGTGCAACCGTATTCTTCAGACAGTATCTCCAGAATAACACCGTTAAAGGTTATTTACGCCGGTATAAATATCTTCGTCCTGCCGACATACTTACGAACAGCAAGAGTGATACCACCGCGTGGTCATACGGTAAGATAGTGAGAACTAAAGCATCCACGGACTTACATTTCTTATGGGAAGTTCCGGCCAGCTTTAAAGCACTTGACACTATTTCTCTATTTTGCAGCTTTAACGCAAACGGTGATGCCGCTTTTACTGCTGGCTCGACCATTCGGGCCGAATTGATTCAGATGGTCGCGTTTGATGGTAATATATCTACAGCACCTTACAGTGCGTTTTCAAACACGAGGGTGGCGACAACAGGACAAACGGATACGACTCTAACCGCGCAATACAGTACTAGCGTCAGTCCGGGCCTTGTGAAAATGACGGACACAACCAATGGACTTGATAACTCATGGTATGTACACTTGTATATGTACAACAATGTAATCGACAACTACATGAAAGAAATTCGCATCTCATATTGGGGGTAA

Protein

Domains

Tail Spike Domain Segmentation

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)