Phage RBP Database

Genbank accession

GENB_771982175e40 [GenBank]

Protein name

tail spike protein

RBP type

TSP

Evidence Phold

Probability 1,00

TSP

Evidence DepoScope

Probability 1,00

TSP

Evidence RBPdetect

Probability 0,91

TSP

Evidence RBPdetect2

Probability 0,97

Seq2Symm

C3 confidence 0,980 truncated

C3	0,980
C1	0,429
C2	0,002

Predicted homo-oligomer symmetry (Seq2Symm, per-class probabilities; C1 = monomer, C2 = dimer, C3 = trimer).

Protein sequence

MANKPTQPLFPLGLETSESSNIKGFNNSGTIEHSPGAVMTFPEDTEVTGLPSSVRYNPDSDEFEGYYENGGWLSLGGGGIRWETLPHAPSSNLLEGRGYLINNTTGTSTVVLPSPTRIGDSVTICDAYGKFATYPLTVSPSGNNLYGSTEDMAITTDNVSATFTWSGPEQGWVITSGVGLGQGRVYSREIFTQILASETSAVTLNTPPTIVDVYADGKRLAESKYSLDGNVITFSPSLPANTELQVIEYTPIQLGNGGGSGSSTITWVYNGGSAIGGETEITLDIVVDDVPAIDINGSRQYKNMGFTFDPLTSKITLAQELDAEDEVVVIINGTPNIYNQIDYTLREVARVTNVKDTEVVYFSVGAVLSGYKVIYDKVTQRSYFIPELPTGTTAVSLSSSAVLVHSAGSVDLGALAVSREEYITLSGTFDSGAVINTKNELLTHTDGKYRWDGALPKTVDAGSTPASTGGIGVGKWLSVGDAALRTNLASYNGFSLIGVCPDVITLRTLSVPIGKKVLLLGYHSDHPGTGGGTLYASSDTSLADDGVRVFVTSDGTRLVRETNGELYASWAGAVGDWNGTTGTDNKEAIERLITASGTEFKWVIDLTNIGVSSVVIDNKNNWNGHINGSVINISAKPAAGAVDRKDQDGGLLPTIKITNSDGWKLTGSFVDNRYREAFYVEYCDNFELGCANLGSGINNNLAANHFRYCNHFKLNGWKVEKSGVIPLAGYYDWVQAIRMWDCSGFIIDGLTSHMNAGNGIYIASNCKDYVVTNFDITENAMSGIQLAWSGFGVMPIRGVISNGTITGNRADSIDVNNTSGIKARLDLIISGVINANNGYNSDGTVTADGSGLGTFINVSHFIVDECSSTSPARSGVAISNCSNFRVKGIIKKDQPSNSDGHGVYIENSADGEIDVDCITDSANANMYSIRTYGALENIHLSGKYVGYTLFGDDATYVNCSLDKASIISPTTVANRFPWENVNVVVSGSNAVDIKSTVNSCRFVSNNGHGGVLSSGNNDISDSEFYGTDGGLYCADNIGQVRVRGGVAQGGSAAGLRISGGEKHIIEGLTTKSTSGNSCVITNASKVIYIGNDDSANPTNFTGTTFTLQN

Physico‐chemical properties

protein length:	1109 AA
molecular weight:	117504,82920 Da
isoelectric point:	4,70987
aromaticity:	0,08386
hydropathy:	-0,14085

Domain architecture

GENB_771982175e40

1 1109 aa

ATT 335–491 · STR 618–963 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

G3DSA:3.30.2020.50
ATT

G3DSA:3.30.2020.50 G3DSA:2.10.10.80 IPR011050 IPR006626 IPR006626 IPR006626

IPR040775
RBD

IPR040775 IPR012334

IPR006626
Unmapped

IPR006626 IPR006626 IPR006626

GENB_771982175e40

11109 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_1946
ATT

DC_1946 DC_0586

GENB_771982175e40

11109 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
G3DSA:3.30.2020.50	ATT	G3DSA:3.30.2020.50	335	420	Merged direct domain	G3DSA:3.30.2020.50	N-terminal	Low	Positional only	289 proteins / 289 hits
IPR040775	RBD	DC_0821	416	481	InterPro cluster	Tail spike TSP1/Gp66, N-terminal domain	Central	High	Text match	1281 proteins / 1285 hits
G3DSA:2.10.10.80	ATT	G3DSA:2.10.10.80	421	491	Merged direct domain	G3DSA:2.10.10.80	N-terminal	Low	Positional only	383 proteins / 383 hits
IPR011050	STR	IPR011050	618	846	Merged direct domain	Pectin lyase fold/virulence factor	Central	Low	Positional only	572 proteins / 572 hits
IPR012334	STR	IPR012334	692	963	Merged direct domain	Pectin lyase fold	Central	Low	Positional only	867 proteins / 867 hits
IPR006626	Unmapped	-	742	764	InterPro	Parallel beta-helix repeat	-	-	-	-
IPR006626	Unmapped	-	766	787	InterPro	Parallel beta-helix repeat	-	-	-	-
IPR006626	Unmapped	-	795	817	InterPro	Parallel beta-helix repeat	-	-	-	-
IPR006626	Unmapped	-	873	907	InterPro	Parallel beta-helix repeat	-	-	-	-
IPR006626	Unmapped	-	1014	1035	InterPro	Parallel beta-helix repeat	-	-	-	-
IPR006626	Unmapped	-	1037	1059	InterPro	Parallel beta-helix repeat	-	-	-	-

Proteins with similar domain architecture

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout

GENB_771982175e40

1 1109 aa

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	580	580	0,9955
Central domain	581	1098	519	0,9945
C-terminal	1099	1109	10	0,2449

Note: Constraints were applied during segmentation.
C-terminal too short, adjusted boundary

N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Phage

Salmonella phage Se-F [NCBI] · taxon 2698906

Uroviricota Caudoviricetes Pantevenvirales Ackermannviridae Kuttervirus Kuttervirus SeG

Host

Salmonella enterica [NCBI] · taxon 28901

Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica

No CDS data available.

Protein

Domains

Tail Spike Domain Segmentation

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)