Protein

View in Explore
Genbank accession
YP_007673829.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,67
Protein sequence
MALTRLKNVFTSKTGRCLYVNSDDFDASDSFDNRGNSPNRPFKSIQRALIEAARFSYKSGQFNDTFESFSIVLYPGDYVIDNRPARDYSQNTQDGRAFIPANLSELSASSDVDLVDENGNVNPNNVLYKFNSVDGGVIVPRGTSIVGMDLRKTKLRPLYVPDPTAATASSAIFRVTGGCYFWQFSFFDGITSGVYNNAANTASTLPPTFSHHKLTCFEYADGKNNITSVKQNDALPGATPSDFSVSDLQLYYQKVAKAWEDIPDSTSVISADELQARVEENRIVGPNTAGPKTIGSVVTDFVSTNVFTTTAEVTTSDAHGFSVGTPVLVEGITGTDAARFNGSFFISAIPTPTTFRYIIRNPANGAPSGNPTAGGSTVKVEVDNVDSSSPYIFNISLRSTWGMQGMHADGSKATGFKSMVVAQFTGVSLQKDDNAFIKWDGSAYIAGSHVDGDSIYKADYRNFHVKASNDSVIQAVSVFAVGFADHFVAESGGDQSITNSNSNFGSCALRAKGFKAAPFTQDKAGTITHVIPPQKLARTYALISGTTFTTTYDNVTVTATNNSHGIVAGDYVRFETSDNIESYLVTTVNPTSGDLTLNRGYRNLHGATSGSGKAAYKGTISEIPVGYVALDVQKIQDNASQGNAAWTINQSGISVGDSRTNGGNAYLATAVGGSGSTAGAGSGPTHTSGVAVDNEVTWAYIGAVNTRLYLYGYTSIATKPPYKLQGFSIGARKQDKIYVSLIDGSTQTTFAALISPDGTASPVDSAYTNITQQQFTPGDTNHPLQYDTYHQNWYLRVTPATSGDSGVNGVTGYGGIHYHLGNETFYANSLFTGSSYTQRIADNRSSRDRTYRMRYTVDNSASLSREPINGYVFQVRNSVTNYNNVYYIYDIQVAQELKQSVQDGIYYLTVLKGSISPTNGNLTQFSFAQNINNLYPTLDKDNPTEDPNAATSIASNITVGLVETTDGSGVEDLSLSITKEAVNTYIEEGNNSYTNSGGAGNPAQTNYITLEARDGDASEVDKTLRMVQVNNTGGTATELRRPSILRSGNHTFEYVGFGPGNYSTGLPSVQNRVLTEAETLLAQSQKEDGGIAFYSGLNSNGDLFIGNTRISAVTGEEASLDTPSLSIVGETANLRPVFDEIIVRDKITVENTQLTSVFKGSVEVNEDVIVTKGLESADITIKGEASNNQATKKFDVTVGTPSTSNAANTGDISFLGNIGNGTNLGYYWTGAAWAKFGLTDTGNLEITGGSASGSTWTDGAGDLQLKNGLGLDIQSGGALNVANGNSTLGGNLSVSGTLTVTSTSEFNNTVDVDANFAVRSGTTDKFTVASSSGNVSTDGTLTVAGQTDLNGHVNLGDGTGDNITISGRVDSDIDPDTSATYDLGSSSLKWRNAQFSGTVTAPTLAGNVDIGSGTSTFNNVTVNGTLSAGNLTGNADTATDLAINATQQLVIQTANNATSTLSSGTNNYILTSNGSGAAPSWQQNFNGNADTATQVYVTETTTNSNYPIVFTDGSTTSNSANRGLQKDNSTLYFNPSTNILTCTSIQATTFGTSSQNAYGARTVSNGNPSGGSNGDIHYKI
Physico‐chemical
properties
protein length:1580 AA
molecular weight: 167095,37970 Da
isoelectric point:4,81718
aromaticity:0,08861
hydropathy:-0,32810

Domains

View on InterPro

No domain architecture available.

Tail Spike Domain Segmentation

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout
YP_007673829.1
1 1580 aa
Domain Start End Length (AA) Confidence
N-terminal 1 80 80 0,8897
Central domain 81 313 234 0,9400
C-terminal 314 1580 1266 0,5389
N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Taxonomy

Phage
Prochlorococcus phage MED4-213 [NCBI] · taxon 889956
Uroviricota Caudoviricetes Eurybiavirus
Host
Prochlorococcus [NCBI] · taxon 1218
Bacteria Cyanobacteria Prochlorales Prochlorococcaceae

Coding sequence (CDS)

Genbank protein accession
YP_007673829.1 [NCBI]
Genbank nucleotide accession
NC_020845.1 [NCBI]
CDS location
range 86924 -> 91666
strand -
CDS
ATGGCACTTACTAGACTAAAAAACGTCTTTACATCAAAAACAGGACGTTGCTTATACGTCAACTCTGATGACTTTGATGCATCAGATAGTTTTGACAATAGAGGTAACTCTCCTAACCGTCCTTTTAAGAGTATACAAAGGGCGTTAATTGAAGCAGCGAGATTTTCATATAAAAGTGGACAGTTTAACGATACGTTTGAGTCATTTAGTATTGTATTATATCCTGGTGACTATGTTATTGACAACAGACCAGCTAGAGATTATAGTCAAAATACTCAAGATGGACGAGCATTTATTCCCGCCAATCTTTCCGAATTAAGTGCATCTAGTGATGTTGATCTAGTAGATGAAAATGGTAATGTAAATCCAAACAACGTATTATATAAATTTAACTCAGTAGATGGTGGTGTAATAGTTCCTAGAGGTACATCTATCGTAGGTATGGACTTACGTAAGACTAAATTACGTCCTCTATATGTTCCTGATCCTACAGCTGCTACTGCTAGTTCTGCAATATTCAGAGTTACTGGTGGATGTTATTTCTGGCAATTCTCATTCTTTGATGGTATAACATCTGGTGTATACAACAATGCTGCGAACACAGCTTCAACTTTACCCCCAACATTTTCTCATCATAAACTTACATGTTTTGAGTATGCCGATGGTAAGAATAATATAACTTCTGTAAAACAAAACGATGCTCTTCCTGGAGCAACCCCAAGTGATTTTTCAGTTAGTGACTTACAACTATACTATCAAAAGGTAGCAAAAGCATGGGAAGACATACCTGATAGCACAAGTGTTATATCTGCTGACGAATTACAGGCAAGAGTAGAAGAGAATAGAATCGTAGGTCCTAACACAGCAGGTCCTAAAACAATAGGTAGTGTTGTTACTGACTTTGTTAGCACAAACGTATTCACAACCACAGCAGAGGTCACAACATCTGATGCTCACGGGTTCTCCGTTGGAACTCCCGTATTAGTTGAGGGTATTACAGGAACTGATGCTGCAAGATTTAATGGATCGTTCTTTATTAGTGCAATACCAACACCAACAACATTTAGATATATTATTAGAAACCCTGCTAATGGTGCACCATCTGGTAACCCAACTGCGGGTGGATCAACGGTGAAAGTAGAAGTTGATAACGTTGATAGTTCATCACCATACATCTTTAACATATCTCTACGTTCTACATGGGGTATGCAGGGTATGCATGCTGATGGTAGTAAAGCAACTGGATTCAAATCTATGGTTGTTGCACAGTTTACTGGTGTATCACTACAGAAAGATGACAATGCATTTATTAAGTGGGACGGATCTGCATATATTGCAGGATCACACGTTGATGGAGACAGTATATACAAAGCAGACTATAGAAACTTCCATGTAAAGGCATCTAATGACTCAGTTATACAGGCTGTCTCAGTGTTTGCTGTTGGATTTGCTGATCACTTTGTTGCTGAGTCTGGTGGTGACCAATCTATCACCAACTCTAATAGTAACTTTGGTTCATGTGCATTAAGAGCAAAAGGATTCAAAGCAGCACCATTTACACAGGATAAAGCTGGAACTATAACACACGTCATACCTCCACAAAAACTTGCAAGAACATATGCACTTATAAGTGGAACTACATTTACTACTACGTATGATAATGTTACTGTAACAGCAACAAACAATTCTCATGGTATTGTAGCGGGTGACTATGTAAGATTTGAAACCTCTGATAACATAGAATCATATCTAGTTACCACAGTTAATCCTACAAGTGGAGACTTAACCTTAAACAGAGGATATAGAAACTTACATGGTGCAACATCTGGTTCTGGTAAAGCAGCATATAAGGGAACTATCAGTGAAATACCTGTTGGTTATGTTGCACTTGACGTTCAGAAAATACAAGACAACGCATCACAAGGTAATGCTGCATGGACAATTAACCAATCTGGTATATCAGTCGGTGACTCTAGAACAAATGGTGGTAATGCATATCTAGCAACTGCGGTAGGTGGATCTGGATCCACAGCAGGAGCAGGATCAGGACCTACTCATACATCTGGTGTTGCTGTTGATAATGAGGTCACATGGGCATATATTGGTGCAGTCAACACAAGATTATATCTTTATGGTTACACATCTATTGCAACCAAACCTCCATATAAATTACAAGGTTTCAGTATTGGTGCACGTAAACAAGACAAAATATATGTGTCATTGATTGATGGGTCTACACAAACTACATTTGCAGCTCTAATTTCTCCTGATGGAACTGCGTCACCTGTTGACTCAGCATATACAAATATAACACAACAACAATTTACACCTGGCGACACTAACCACCCACTACAGTATGATACTTATCATCAAAACTGGTATTTAAGAGTAACTCCTGCCACATCTGGAGATAGTGGAGTTAATGGAGTCACAGGATATGGGGGTATTCATTATCATCTAGGTAATGAGACATTCTATGCTAACTCATTATTCACTGGATCATCATATACTCAACGTATTGCTGACAATAGATCATCTAGAGATAGAACATATAGAATGCGTTACACTGTAGATAACTCTGCAAGTTTGTCAAGAGAACCTATTAACGGTTACGTATTCCAAGTAAGAAACAGTGTTACAAATTACAATAATGTTTACTACATTTATGATATACAAGTAGCACAAGAACTTAAACAGTCAGTGCAAGATGGTATTTACTACTTGACAGTATTGAAAGGTAGTATATCACCGACAAATGGTAACTTAACTCAGTTCTCATTTGCACAGAATATTAATAACTTATATCCTACCTTAGACAAAGATAACCCAACTGAAGATCCTAACGCTGCAACATCTATTGCAAGTAATATCACTGTTGGTTTAGTTGAGACTACTGACGGATCAGGTGTAGAGGATCTATCTTTATCAATTACAAAAGAAGCAGTAAACACATATATTGAGGAAGGAAACAACTCATATACAAACTCTGGTGGAGCAGGAAACCCTGCACAGACAAATTATATTACTCTTGAAGCAAGAGATGGTGATGCATCTGAAGTTGATAAAACCTTACGTATGGTACAGGTCAACAACACAGGTGGTACAGCAACTGAACTTAGACGACCTAGTATCCTAAGATCTGGTAACCACACATTTGAATACGTTGGTTTCGGACCAGGTAACTATTCAACTGGTCTACCTTCAGTTCAGAACAGAGTTCTTACTGAAGCTGAGACACTACTAGCACAGTCACAGAAAGAAGACGGTGGTATCGCATTCTACTCTGGTCTTAACAGTAATGGTGACTTATTCATTGGTAATACTAGAATCTCTGCTGTTACTGGTGAGGAAGCATCACTTGATACACCATCACTATCAATTGTTGGTGAGACTGCAAACTTACGTCCTGTATTTGATGAGATCATCGTTAGAGATAAGATTACAGTTGAAAATACACAGTTAACCAGTGTATTCAAGGGTAGTGTTGAAGTCAATGAGGATGTAATAGTAACTAAAGGTTTAGAATCTGCTGATATTACAATCAAAGGAGAAGCATCTAATAACCAAGCAACTAAAAAGTTTGACGTTACAGTAGGAACACCAAGCACTTCTAACGCTGCAAACACAGGAGATATATCATTCTTAGGAAATATTGGTAATGGAACTAATCTTGGTTACTACTGGACAGGTGCAGCATGGGCAAAGTTTGGACTAACTGACACAGGTAACTTAGAAATTACAGGTGGTAGTGCATCTGGTTCCACATGGACTGATGGTGCAGGAGACTTACAACTTAAGAATGGATTAGGACTAGACATACAATCTGGTGGTGCACTTAATGTTGCCAATGGTAATTCTACACTTGGTGGTAATTTAAGCGTCAGTGGAACTCTAACTGTTACAAGCACATCTGAATTTAATAATACAGTTGATGTTGATGCAAACTTTGCAGTCAGATCTGGAACAACTGATAAGTTTACAGTCGCATCAAGTTCTGGTAATGTATCTACAGATGGAACATTAACAGTTGCAGGACAGACTGATTTAAACGGACATGTTAATCTTGGTGATGGAACAGGTGATAACATAACAATCAGCGGTAGAGTAGATTCAGATATAGATCCAGATACATCTGCAACATATGATTTAGGTTCTAGTTCATTAAAGTGGAGAAATGCTCAGTTCTCAGGTACAGTCACTGCACCTACACTAGCTGGTAACGTAGATATAGGATCTGGAACATCTACATTTAATAATGTAACAGTAAATGGAACATTATCTGCAGGAAACTTAACTGGTAACGCTGATACAGCAACTGATCTTGCTATCAATGCAACACAGCAACTTGTTATTCAAACAGCTAATAATGCAACATCTACATTATCATCTGGAACTAATAACTATATCCTAACATCTAACGGATCAGGAGCAGCACCATCATGGCAGCAAAACTTTAATGGTAATGCTGATACAGCGACACAAGTATATGTTACTGAAACAACTACTAACAGTAACTATCCTATTGTCTTCACTGATGGCAGCACTACATCAAACTCTGCTAATAGGGGACTACAGAAAGATAATTCTACCTTGTATTTCAATCCTAGCACTAATATACTTACTTGCACCAGTATACAAGCAACAACATTTGGAACATCATCACAAAACGCATATGGTGCAAGAACCGTATCCAATGGTAATCCTAGTGGTGGAAGTAATGGAGATATCCACTATAAAATCTAA

Genome Context

Tertiary structure

YP_007673829.1
ColabFold structure
Source ColabFold
pLDDT 78.9
Oligomeric state monomer
Download structure

Literature

Title Authors Date PMID Source
The Genome Sequence of Cyanophage MED4-213 Henn,M.R., Sullivan,M.S., Osburne,M.S., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E.R., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Yu,Q., Coleman,M.L., Huang,K.H., Weigele,P.R., DeFrancesco,A.S., Kern,S.E., Thompson,L.R., Fu,R., Hombeck,B., Chisholm,S.W., Haas,B., Nusbaum,C. and Birren,B. 2011-09-23 — GenBank