Protein

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Genbank accession
YP_010673044.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,87
TF
Evidence RBPdetect2
Probability 0,89
Protein sequence
MSRELMPKSGIMMPHVVVTRDAAVVGVSTVDGAAGAINLTEKYLQKSDAEATYQTKAEGATKQYVTDAINPIMTNALFKDDPFVNNDTPIRSGGGNGVESVDMIKVTPENTIKLGSYASSVQGVEIHSAGRLQVVDQNDSGVETKYPVYSKRYRPEIEDLPFAAIGSYVKDSKGRTVGVTRTGINSDIKQLTQKVTFTQPVTVADAVGDYDAVTLRQLRNSGGGSGGPTMSGISNFGIGDFHLRDSRAFIPAFEVVSDGQLLNRADYPDLWAYAQLLSPIEDSLWLSNIYQRGKYSTGNGTTTFRVPDRNGIQEGSLKALYGRGDGGASAANGQIFDSAAPNIYGDIGGVVAYGQTGAILRGQEEQPLAPQPSTGNGVLRVSLDASKASPVYGRSTDEILTRNFVGVWTIRAHGGFTAANTSWSVVNSDTNRPPKGTKASSGSVVAEYKIGSEVEASTTLQTDAYIDGAYYGIINVYNKTKGVTKQLAFDDSGTLNSDRYVARFGTLMSWSETGSRRGTFSTDNQGIGANYSFNSILSASQASQGGYKTTTHVGMIHNDAGTFADSCWHVAGDEDNKYGCRLTLRPNRNEIYYYTWQPSSTGTYTLAMNPVSDEKLKHNIQDISPDEAIRAIKGLDFKSFVYNNDNQGRTRRGIIAQQAEKVEPLYVKTRKFHDNDGVEQEQKELDATPMLLDTMQVVQDLLKRIEVLEAKLAEK
Physico‐chemical
properties
protein length:715 AA
molecular weight: 77468,21580 Da
isoelectric point:5,66698
aromaticity:0,08252
hydropathy:-0,44350

Domains

Domains [InterPro]
DC_1514
STR
20–335
DC_1514 DC_1985
IPR030392
CHP
612–712
IPR030392
IPR030392
CHP
612–664
IPR030392
YP_010673044.1
1 715
Architecture
STR
RBD
STR 20-335 | RBD 386-715
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010673044.1
1 715
Domain Start End Length (AA) Confidence
N-terminal 1 97 97 0,8543
Central domain 98 296 200 0,1946
C-terminal 297 715 418 0,9324
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-97
Central
98-296
C-terminal
297-715

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage vB_EcoP-101114UKE3
[NCBI] 		2865794 Uroviricota > Caudoviricetes > Mktvariviridae > Suseptimavirus > Suseptimavirus 101114UKE3
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010673044.1 [NCBI]
Genbank nucleotide accession
NC_070982.1 [NCBI]
CDS location
range 12464 -> 14611
strand +
CDS
ATGTCTAGAGAACTAATGCCCAAATCTGGCATAATGATGCCTCATGTAGTTGTAACCAGAGATGCGGCTGTTGTTGGCGTTTCTACTGTAGATGGGGCCGCTGGTGCTATCAACTTAACAGAAAAATACCTTCAGAAATCTGACGCTGAAGCAACCTATCAAACGAAAGCAGAAGGGGCTACTAAGCAATATGTAACCGACGCTATCAACCCCATTATGACAAATGCTCTTTTTAAAGATGACCCCTTTGTTAATAATGACACACCTATTCGCTCTGGCGGTGGTAATGGTGTTGAATCGGTAGATATGATTAAAGTCACCCCTGAGAACACCATCAAACTAGGGAGCTATGCTTCTTCTGTTCAGGGGGTTGAGATTCATTCTGCTGGTCGTCTTCAGGTTGTTGATCAGAATGATAGTGGTGTAGAAACTAAATACCCTGTGTATTCTAAGCGCTATCGTCCTGAGATTGAAGATTTACCTTTTGCTGCAATCGGTTCTTATGTTAAGGATTCAAAAGGTCGTACTGTTGGTGTAACCCGTACCGGTATCAACTCTGATATCAAACAACTTACACAGAAAGTCACTTTTACTCAACCTGTAACCGTAGCCGATGCTGTAGGCGATTATGATGCAGTGACACTGAGACAGCTTCGTAACAGTGGTGGTGGTTCTGGAGGTCCTACCATGAGTGGTATCTCGAACTTTGGTATCGGTGATTTCCACTTACGCGATAGTCGTGCTTTTATCCCAGCTTTTGAAGTAGTGTCTGATGGTCAGCTTTTGAATCGTGCTGATTATCCAGATTTGTGGGCTTATGCTCAACTGCTATCTCCAATCGAGGATTCTCTTTGGTTATCTAACATCTACCAGAGGGGTAAATACTCTACGGGTAACGGTACAACGACTTTCCGTGTTCCTGACCGAAATGGTATTCAAGAAGGGTCTCTGAAAGCTCTGTATGGTCGTGGTGATGGTGGAGCTTCGGCTGCTAATGGTCAAATATTTGATTCTGCTGCTCCTAACATTTATGGAGATATTGGTGGTGTTGTTGCTTATGGCCAGACTGGAGCTATTCTACGAGGTCAAGAGGAACAACCTCTCGCCCCTCAACCTTCAACTGGAAATGGTGTCTTGAGAGTTAGTTTAGACGCCTCAAAAGCAAGTCCTGTATATGGTCGTTCCACCGATGAAATCCTAACCCGTAACTTTGTTGGTGTTTGGACTATTCGTGCTCATGGTGGTTTTACTGCTGCTAATACTTCTTGGTCTGTTGTTAACAGTGACACAAATCGTCCTCCTAAAGGAACTAAAGCTTCTAGCGGTTCTGTTGTTGCTGAATATAAAATTGGTTCAGAAGTAGAGGCTTCTACTACGCTCCAAACTGATGCTTATATCGACGGAGCTTATTATGGGATTATCAATGTTTATAATAAAACCAAAGGAGTTACCAAGCAATTAGCTTTTGACGATTCTGGAACCCTGAACTCTGATAGATATGTTGCTCGGTTTGGGACATTGATGTCTTGGAGTGAAACAGGAAGTCGCAGAGGGACGTTTTCTACAGACAACCAAGGGATCGGTGCTAACTACTCTTTTAACTCTATACTGAGTGCTTCCCAAGCATCCCAAGGTGGATACAAAACTACTACCCATGTAGGGATGATTCACAATGATGCTGGAACTTTTGCTGATTCTTGTTGGCACGTAGCTGGGGATGAAGATAACAAGTATGGTTGTCGTTTAACTCTTCGACCAAACAGAAATGAGATTTATTACTACACTTGGCAGCCAAGTTCAACCGGAACTTATACTCTTGCTATGAATCCTGTATCTGATGAAAAGTTGAAACATAACATCCAAGATATCTCTCCTGATGAAGCAATTCGTGCGATAAAAGGTTTGGATTTCAAATCGTTTGTGTACAACAATGATAATCAAGGAAGAACTCGTCGTGGTATCATTGCACAGCAGGCAGAGAAAGTTGAACCTCTTTATGTTAAAACTCGTAAATTCCATGACAACGATGGGGTAGAGCAGGAACAGAAAGAGTTGGATGCAACTCCAATGCTTTTAGATACCATGCAGGTTGTTCAAGATCTGCTGAAGCGTATTGAAGTTCTAGAAGCGAAGTTAGCAGAGAAGTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
6ba83d87e008acdcbc6423e708a05ddfca9814c2a809854c5791612aacd59077
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5982
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Naturally bred epsilon2 phages have an improved host range and effectivity in uropathogenic E. coli over their ancestor phages Saez,D., Loose,M., Mutti,M., Visram,Z., Hitzenhammer,E., Dippel,D., Tisakova,L., Schertler,S., Wittmann,J., Corsini,L. and Wagenlehner,F. 2020-05-19 — GenBank