Phage RBP Database

Genbank accession

YP_009785006.1 [GenBank]

Protein name

tail fiber protein

RBP type

TF

Evidence UniProt/TrEMBL

Probability 1,00

TSP

Evidence DepoScope

Probability 1,00

TSP

Evidence RBPdetect

Probability 0,91

TSP

Evidence RBPdetect2

Probability 0,64

Seq2Symm

C3 confidence 0,998

C3	0,998
C1	0,002
C4	0,001

Predicted homo-oligomer symmetry (Seq2Symm, per-class probabilities; C1 = monomer, C2 = dimer, C3 = trimer).

Protein sequence

MTTQFYSLITKYGESVIAQAVANNTPVPLKTMAIGDGNGTPTTPSESQTTLINEVYRAEITDLLQDSETPNQVIAELLVPETVGGFTVREVGIYDDQNKLVAVANCPENYKPVLEQGSGKVQYYRIVLRVSSSDSVTLSLNNNIVYATRLEFNRFVNDLSKPDGFKLVGECESITQLRTIEPTEDQQRILVKSYHARKNLGGGVFYADFADTTTADNAGTVIVTAGGKRWKRVYSTLNIFDFGVSLDSVNNDAIKRLQAWQEPVLGLGNVIPASSRIVPASHISQVAYRFNGIDYLSEDYYKADLSQITRTGYYTAWTQDKAFVHNGVIYAPFMLAFRHGYDDLRIAWVKSFDNGNTWTTPEILMDYHPQNPTLGWHCFSMGIVGNRLFMLVEERDVASKKMVRSFLYSRVMTKNFFVTGGISQSGNVVTVELEEHGLFVGDSISFSNSGISGVSGKMTVTSVLDANRFTVMNSKEQTITNNDSWLCATYFEDNQWQIQELSTFANSAGVAATHLHSFCPVNRSQFAFGFHNGDASPREIGFVKCSINWATGRVTTDKIILPETLSRAAAEPCLRYYKNKLFLTTRSQNPNVGSLLIRCDLNGENISSFNISAEKIHYTNMPFHIENDVIYMFAAERAENEWETGQSDKSGNRYRANRPRMFLLKHRLSDWGKPEKTEVQVISQGIYSGEAANSACGVGSIVYKDGILHCLFGDEDYRNSHSLTENARKANNAHIDSGYQPEIYSLRIVIDKQMAGVTDKPLRGADNLHLPVFRGTDGVRTVQSPVRFSEKVEFDNAVALAVATVGRILASSKAGADYAMYGTDYLNDANRLYLSSTHQANSQNGSTITLHNDKSEEGSIIDYRATAHKFLGGVHINTGVINTPPESAGNTEIVNAKWVNSQIEKNNTEKVLFSGSTQEPVSVQVSSLRGQIHVLASIRGVKRWDSFSLWSSNNTYIGASEYGGENADRNYGSLIRVSINDRTLTLTPTSTYLPTIKKIIHLGA

Physico‐chemical properties

protein length:	1004 AA
molecular weight:	111273,42610 Da
isoelectric point:	6,18536
aromaticity:	0,09562
hydropathy:	-0,30538

Domain architecture

YP_009785006.1

1 1004 aa

ATT 1–149 · STR 292–752 · STR 761–872 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR022225
ATT

IPR022225 IPR036278 IPR044914

IPR051934
Unmapped

IPR051934 IPR001724 IPR001724 IPR023366 IPR001724 IPR001724 IPR001724 IPR024430

IPR024428
ENZ

IPR024428 SSF69349

G3DSA:2.120.10.10
STR

G3DSA:2.120.10.10 IPR001724

G3DSA:2.120.10.10
STR

G3DSA:2.120.10.10

IPR024427
ENZ

IPR024427

IPR001724
Unmapped

IPR001724

YP_009785006.1

11004 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_1371
STR

DC_1371

YP_009785006.1

11004 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR022225	ATT	DC_0271	1	149	InterPro cluster	Phage tail fibre protein, N-terminal domain	Central	Medium	Text match	271 proteins / 271 hits
IPR051934	Unmapped	-	1	151	InterPro	Bacteriophage Tail Fiber Structural Protein	-	-	-	-
IPR036278	STR	IPR036278	292	752	Merged direct domain	Sialidase superfamily	Central	Low	Positional only	56 proteins / 56 hits
IPR001724	Unmapped	-	303	327	InterPro	Glycosyl hydrolase 58	-	-	-	-
IPR024428	ENZ	DC_0114	304	750	InterPro cluster	Endosialidase, beta-propeller domain	Central	High	Text match	92 proteins / 92 hits
G3DSA:2.120.10.10	STR	G3DSA:2.120.10.10	304	749	Merged direct domain	G3DSA:2.120.10.10	Central	Low	Positional only	42 proteins / 42 hits
G3DSA:2.120.10.10	STR	G3DSA:2.120.10.10	315	749	Merged direct domain	G3DSA:2.120.10.10	Central	Low	Positional only	42 proteins / 42 hits
IPR001724	Unmapped	-	368	396	InterPro	Glycosyl hydrolase 58	-	-	-	-
IPR023366	STR	IPR023366	413	494	Merged direct domain	ATP synthase subunit alpha, N-terminal domain-like superfamily	Central	Low	Positional only	44 proteins / 44 hits
IPR024427	ENZ	DC_0382	417	483	InterPro cluster	Endosialidase, beta-barrel domain	Central	High	Text match	86 proteins / 86 hits
IPR001724	Unmapped	-	482	505	InterPro	Glycosyl hydrolase 58	-	-	-	-
IPR001724	Unmapped	-	558	584	InterPro	Glycosyl hydrolase 58	-	-	-	-
IPR001724	Unmapped	-	639	665	InterPro	Glycosyl hydrolase 58	-	-	-	-
IPR001724	Unmapped	-	696	720	InterPro	Glycosyl hydrolase 58	-	-	-	-
IPR044914	RBD	IPR044914	761	876	Merged direct domain	Endosialidase, C-terminal domain superfamily	C-terminal	Low	Positional only	39 proteins / 39 hits
IPR024430	ENZ	DC_0521	767	870	InterPro cluster	Endosialidase, C-terminal domain	C-terminal	High	Text match	95 proteins / 95 hits
SSF69349	STR	SSF69349	767	872	Merged direct domain	SSF69349	Central	Low	Positional only	153 proteins / 153 hits
IPR001724	Unmapped	-	829	856	InterPro	Glycosyl hydrolase 58	-	-	-	-

Proteins with similar domain architecture

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout

YP_009785006.1

1 1004 aa

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	251	251	0,9970
Central domain	252	510	260	0,8437
C-terminal	511	1004	493	0,5522

N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Phage

Mannheimia phage vB_MhM_1127AP1 [NCBI] · taxon 1572746

Uroviricota Caudoviricetes Peduoviridae Baylorvirus Baylorvirus bv1127AP1

Host

Mannheimia haemolytica [NCBI] · taxon 75985

Pseudomonadota Gammaproteobacteria Pasteurellales Pasteurellaceae Mannheimia Mannheimia haemolytica

Genbank protein accession

YP_009785006.1 [NCBI]

Genbank nucleotide accession

NC_047750 [NCBI]

CDS location

range 15672 -> 18686
strand +

CDS

ATGACAACACAGTTTTATAGCTTAATCACAAAATATGGCGAGAGCGTTATTGCTCAAGCTGTTGCGAATAATACACCAGTGCCATTGAAAACAATGGCGATTGGTGATGGTAACGGTACACCAACTACGCCAAGTGAGAGTCAAACTACACTCATTAATGAGGTTTACCGAGCTGAAATCACGGATTTGTTGCAAGATAGCGAAACACCTAATCAGGTAATTGCAGAATTACTTGTGCCGGAAACAGTAGGCGGCTTTACCGTCCGAGAGGTCGGTATTTATGATGACCAAAACAAACTTGTTGCGGTTGCCAACTGCCCTGAAAATTATAAGCCGGTGTTAGAGCAAGGTAGTGGCAAAGTGCAATACTACCGTATTGTGCTAAGAGTTAGCAGTAGTGATTCGGTTACGTTGTCACTAAATAATAATATTGTTTACGCCACAAGGCTTGAGTTTAATCGATTTGTGAATGACCTTAGCAAGCCAGATGGTTTCAAGTTAGTTGGTGAATGTGAATCTATTACTCAACTACGCACCATCGAGCCAACAGAAGACCAGCAACGTATTTTGGTTAAATCCTACCACGCCCGAAAGAACCTTGGTGGTGGGGTGTTTTATGCTGATTTTGCGGATACCACAACCGCAGACAATGCTGGGACGGTGATTGTGACGGCCGGTGGCAAACGATGGAAACGAGTTTATTCAACACTCAATATCTTTGACTTTGGAGTCAGCTTAGACAGCGTGAATAACGATGCCATCAAGCGCTTGCAAGCGTGGCAAGAGCCGGTTTTAGGGTTGGGGAATGTGATTCCGGCAAGTTCAAGAATTGTGCCGGCTAGCCATATCTCACAAGTAGCTTATAGATTTAACGGTATTGATTACTTGTCTGAGGATTATTATAAGGCGGACTTATCACAAATTACCCGAACAGGTTATTACACAGCTTGGACTCAAGATAAAGCATTTGTTCATAATGGAGTGATTTATGCCCCCTTTATGTTGGCTTTCCGCCACGGCTATGATGACTTGCGTATTGCTTGGGTCAAATCCTTTGATAATGGCAATACTTGGACGACGCCAGAAATTTTAATGGACTATCATCCGCAAAATCCAACATTGGGTTGGCACTGTTTTTCTATGGGCATTGTTGGAAATCGGTTATTTATGCTTGTAGAAGAGCGTGATGTGGCGAGTAAGAAAATGGTTCGGTCATTCTTGTATAGCCGAGTAATGACTAAGAATTTTTTTGTAACAGGTGGCATTTCGCAATCCGGTAATGTAGTAACCGTAGAATTAGAAGAACACGGGTTATTTGTAGGCGATTCCATTTCGTTCTCCAATAGCGGAATCTCCGGTGTGAGTGGTAAAATGACAGTCACCTCCGTATTAGACGCAAACCGTTTTACGGTGATGAATAGCAAAGAACAGACTATTACCAACAACGATAGCTGGCTTTGTGCAACCTACTTTGAAGATAACCAATGGCAAATTCAAGAATTAAGCACGTTTGCCAATAGTGCTGGCGTTGCCGCTACGCACTTGCATAGTTTTTGCCCAGTGAATCGTTCACAGTTCGCCTTCGGGTTTCATAATGGTGATGCTTCACCTCGTGAAATCGGCTTTGTGAAATGTAGCATCAACTGGGCAACAGGTAGAGTGACAACGGATAAGATTATTCTCCCTGAAACGTTAAGTCGGGCTGCCGCTGAGCCTTGTTTACGATATTACAAAAACAAATTATTTTTAACGACCCGGTCACAAAATCCGAATGTAGGGTCACTTCTAATTCGTTGTGACTTAAACGGGGAAAATATCAGTTCATTCAATATTTCCGCGGAAAAGATTCACTACACCAATATGCCATTTCATATTGAGAATGATGTGATTTATATGTTCGCCGCCGAACGAGCGGAAAATGAATGGGAAACAGGGCAAAGCGATAAAAGTGGCAACCGCTATCGAGCAAATCGTCCACGAATGTTTTTGCTTAAGCATAGATTAAGCGATTGGGGCAAACCGGAAAAAACAGAAGTTCAGGTTATTTCGCAAGGCATTTATTCCGGCGAAGCAGCTAACAGTGCTTGTGGTGTTGGGTCAATCGTTTATAAAGATGGTATCTTGCATTGCCTCTTTGGTGATGAGGATTACCGTAATAGCCATTCTCTCACAGAGAATGCAAGAAAAGCCAATAACGCACATATTGATAGTGGTTATCAACCTGAAATTTACTCATTAAGGATTGTAATTGATAAGCAGATGGCAGGGGTGACAGACAAGCCTCTAAGAGGTGCGGATAATCTGCATCTACCTGTGTTTAGAGGCACTGACGGTGTTCGAACTGTTCAAAGTCCGGTTAGATTTAGCGAAAAAGTCGAATTTGACAACGCTGTTGCATTGGCGGTGGCGACTGTTGGAAGAATACTGGCCAGCAGCAAAGCCGGTGCAGATTATGCGATGTACGGCACGGATTATCTTAATGATGCGAATCGGCTTTATCTGTCAAGTACACACCAAGCTAACAGCCAGAACGGCTCAACAATCACGCTACACAATGATAAAAGCGAAGAGGGTAGCATTATTGACTATAGAGCAACTGCCCATAAATTTTTGGGAGGTGTGCATATTAACACAGGGGTGATTAATACTCCGCCCGAATCAGCGGGAAACACAGAAATTGTCAATGCTAAGTGGGTTAACTCGCAAATCGAAAAAAATAACACCGAAAAGGTGTTATTTAGTGGCTCTACACAAGAGCCTGTGTCGGTGCAGGTAAGTAGTTTGCGAGGCCAAATCCACGTGTTGGCAAGTATTAGAGGCGTAAAACGTTGGGATAGCTTTAGCCTCTGGAGCAGCAATAATACCTATATCGGAGCCTCAGAATATGGAGGCGAAAATGCAGATAGAAACTATGGCTCATTAATTAGAGTTAGTATTAACGATAGAACCTTAACGCTAACCCCAACCTCAACATATTTGCCAACAATTAAAAAAATTATACACCTAGGAGCATAA

Protein

Domains

Tail Spike Domain Segmentation

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)