Protein

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Genbank accession
YP_010050818.1 [GenBank]
Protein name
virion structural protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MAIVVNGVDPDIYVGSTPVREVYVGSSRVWARGERLEDPLDNPNGWTLSQSSGGGIIIDGEARIAADGTGYAHNVTPAMTDDQYVACEVGGYTHGSRQSALFSHDDGNRGGHYMAVWTTGRVDFIRASGWASQTTAFASWTGSISSADWIEMWNVGARFRVAVRGTVVIDHVVSNPALGGRRQGIVLTRSAFASSSRMAAWRGGDRRRWGK
Physico‐chemical
properties
protein length:211 AA
molecular weight: 22735,95840 Da
isoelectric point:7,96850
aromaticity:0,09479
hydropathy:-0,27299

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010050818.1
1 211
Domain Start End Length (AA) Confidence
N-terminal 1 27 27 0,8966
Central domain 28 200 174 0,0164
C-terminal 201 211 10 0,9564
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-27
Central
28-200
C-terminal
201-211

Taxonomy

  Name Taxonomy ID Lineage
Phage Gordonia phage Catfish
[NCBI] 		2301538 Uroviricota > Caudoviricetes > Ruthgordonvirinae > Catfishvirus catfish >
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010050818.1 [NCBI]
Genbank nucleotide accession
NC_054434 [NCBI]
CDS location
range 23773 -> 24408
strand +
CDS
ATGGCGATTGTGGTTAACGGCGTGGACCCTGACATTTACGTCGGGTCCACGCCCGTCCGCGAGGTCTACGTCGGGTCGTCCCGCGTGTGGGCGCGAGGCGAGCGGCTGGAAGATCCGCTAGACAATCCGAACGGCTGGACGTTGTCGCAGTCGTCCGGCGGCGGGATCATCATTGACGGCGAGGCGCGGATTGCGGCGGACGGGACCGGCTACGCCCACAACGTCACGCCCGCGATGACTGACGATCAGTATGTCGCGTGTGAGGTCGGCGGGTACACGCACGGCTCACGGCAGTCGGCACTGTTCTCCCACGACGACGGCAACCGTGGCGGGCACTACATGGCGGTGTGGACGACCGGGCGGGTCGATTTCATTCGCGCGTCTGGATGGGCCTCGCAGACAACAGCGTTCGCGTCATGGACGGGTTCGATCAGCTCGGCCGATTGGATCGAAATGTGGAACGTCGGTGCCCGGTTCCGGGTCGCCGTGCGGGGGACCGTGGTGATCGACCACGTGGTGAGTAACCCGGCGCTCGGTGGGCGTCGGCAAGGAATCGTCCTGACGCGGAGCGCGTTCGCGAGTTCGTCCCGTATGGCGGCGTGGCGCGGCGGCGACCGGCGTCGGTGGGGCAAGTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
da4a97051b163fe3be14abd3b4399046d5d0ee21ff647ca6f2b13ee28d3d0565
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8269
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50