Protein

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Genbank accession
AUR99320.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MPLVLDPIQSGYNLSKINDNFQRIEDTWDEKLDRVNSGSFYNQMDQALDMNSNEIINAIVTDDPTSLVTKEYVDALFNAIDGAEGIVPIIQPRQQGDGVTKVFSTPATEPAPNNSFFVQIDGITQRPLTDFTATPTGFLTFQEAPPLLSDIDITYFEPSVIGEGDLSNRTVVATDSTEERTLGDRFADVVNVKDYGALGDGLTDDTVAIQAAFNADGNTIYFPESTYVVTTGLNLPANKNILGNGSTLDASTFTEANTPVVAQAGAVRSSTVLTSDVALGGLNLPLSDVSSLNIGDYILVRSTEDNSWAGDFGVGRAYRKQTFFEVINITGNIVTTGDQTNTTFESATTVVDILDTSTAFYKDLKVIVREDNQARGLNVDYSLNTVFQNIHIEGGEITGFNNTRCVGTIYDKCSVRLLAPATNTQYGIAVSSSDLTTVRDCVLTATRHAVAIVGDQCRRTHVFNSKLRADIGPDAHASADSYIYENCDVYGKHAFKIGGRDGTWVNCRAFTENGTIILADEIRSGNFKFRNCSVATFSSTTAGVGWSPIDLGRGTAAISTSSRGDVTFDFEDCDFELPNQTAYCFRIGNDSPYKVNMRAKHVQVDMPNLSQAVITYEGNPTGGDADFVILRDITTNSINNTIRVFAGGVGATGYDSTDIQYPFSGNINGLEDGTGIKVNTFGYITSENSNPFETTFKVLGTAASNGRLELTSEARFGNIAFRTGFDGSANPLTDKMLLSTEGYLTFENMPTSSGGLPTGTLWNDAGTIKIA
Physico‐chemical
properties
protein length:771 AA
molecular weight: 83092,90260 Da
isoelectric point:4,40681
aromaticity:0,08949
hydropathy:-0,19663

Domains

Domains [InterPro]
DC_2003
STR
1–572
DC_2003 DC_1320
IPR012334
STR
170–572
IPR012334
IPR011050
STR
187–568
IPR011050
IPR024535
ENZ
190–253
IPR024535 IPR054136
AUR99320.1
1 771
Architecture
STR
ENZ
RBD
STR 1-572 | ENZ 573-609 | RBD 610-771
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AUR99320.1
1 771
Domain Start End Length (AA) Confidence
N-terminal 1 206 206 0,9943
Central domain 207 663 458 0,9811
C-terminal 664 771 107 0,8858
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-206
Central
207-663
C-terminal
664-771

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage 1.264.O._10N.286.51.F2
[NCBI] 		1881447 No lineage information
Host Vibrio splendidus
[NCBI] 		29497 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AUR99320.1 [NCBI]
Genbank nucleotide accession
MG592629.1 [NCBI]
CDS location
range 5603 -> 7918
strand +
CDS
ATGCCATTAGTATTAGATCCGATTCAGTCGGGTTATAACTTGTCAAAGATAAATGACAACTTCCAGCGTATTGAAGATACGTGGGATGAGAAATTAGACAGAGTGAACTCTGGTAGTTTTTACAACCAGATGGATCAAGCGTTAGATATGAACTCTAACGAAATTATTAACGCAATAGTGACAGATGACCCAACTAGCCTTGTAACTAAAGAATACGTTGATGCGTTATTCAACGCTATTGACGGTGCAGAAGGTATTGTTCCCATCATTCAACCGCGTCAACAAGGTGATGGTGTAACTAAAGTATTCAGTACCCCTGCTACAGAACCTGCACCTAACAACTCTTTCTTTGTACAGATTGATGGTATTACGCAGAGACCTCTTACAGATTTTACAGCAACCCCTACAGGGTTCTTGACATTCCAAGAAGCTCCTCCTCTACTATCTGATATCGATATCACTTACTTTGAACCTTCTGTTATAGGTGAAGGCGATCTCTCTAACAGAACTGTAGTTGCTACAGATTCTACGGAAGAACGTACACTAGGTGACAGGTTTGCTGATGTAGTTAATGTAAAAGACTATGGTGCATTAGGCGATGGTCTTACAGATGACACAGTCGCTATTCAAGCTGCGTTCAACGCTGATGGAAATACCATCTATTTCCCTGAGTCAACATATGTAGTTACAACAGGTCTAAACCTCCCAGCGAATAAGAATATTTTAGGCAATGGTTCAACACTAGATGCGTCTACATTCACTGAAGCGAATACTCCTGTAGTTGCTCAAGCAGGGGCAGTTCGTTCTAGCACAGTCTTGACCTCTGATGTAGCGTTAGGGGGACTTAACCTTCCTCTCAGCGATGTTTCAAGCTTGAACATAGGTGACTATATCCTTGTGCGTTCTACAGAGGATAACTCTTGGGCTGGAGACTTCGGTGTAGGTCGTGCGTACCGTAAACAAACATTCTTTGAAGTGATTAATATCACAGGTAATATTGTAACAACAGGTGATCAAACTAACACTACGTTTGAGAGCGCAACAACAGTTGTTGACATCCTTGATACTTCAACTGCTTTCTACAAAGACTTAAAAGTAATTGTACGTGAAGATAACCAAGCTCGTGGTTTGAATGTAGATTATAGTTTAAACACTGTATTTCAAAACATCCATATCGAGGGTGGAGAGATTACAGGTTTTAATAACACCAGATGCGTAGGCACTATCTACGATAAGTGTTCAGTACGTCTTCTGGCTCCAGCCACAAACACTCAGTATGGTATCGCCGTATCGAGTTCTGATCTGACAACTGTACGCGACTGTGTACTTACAGCTACTCGACATGCTGTTGCTATTGTTGGAGACCAGTGTAGAAGAACACATGTCTTCAATAGTAAGTTACGCGCAGATATTGGACCTGATGCACACGCTAGTGCAGATAGTTATATCTATGAGAATTGTGATGTTTATGGAAAACATGCTTTTAAGATTGGTGGTCGAGATGGCACATGGGTTAACTGTCGCGCATTTACGGAAAATGGTACGATCATCTTAGCTGATGAAATCCGAAGCGGAAATTTTAAATTCAGAAACTGTTCAGTAGCAACATTCAGTTCTACCACAGCAGGTGTAGGTTGGTCTCCGATTGACCTAGGTCGCGGTACAGCAGCTATCTCAACTTCATCTCGTGGTGATGTTACTTTTGATTTTGAAGATTGTGATTTTGAATTACCGAACCAAACAGCTTACTGTTTCCGAATTGGTAACGACAGCCCTTACAAAGTTAATATGCGTGCTAAGCATGTTCAAGTTGATATGCCTAACCTTTCTCAGGCGGTGATTACCTATGAAGGTAACCCTACTGGGGGTGACGCAGATTTTGTAATCTTGAGGGATATTACTACTAACTCTATTAATAACACTATCCGTGTTTTCGCAGGTGGTGTTGGGGCTACAGGTTATGATAGTACAGATATCCAATACCCGTTTTCTGGGAACATCAACGGTCTAGAAGACGGTACAGGCATTAAAGTAAATACCTTTGGGTACATTACTTCTGAAAACAGTAACCCATTTGAAACCACATTTAAGGTTCTAGGAACAGCAGCTTCTAACGGTCGTCTTGAGTTAACCTCTGAAGCACGTTTCGGAAACATTGCGTTTAGAACAGGTTTCGATGGTTCAGCAAACCCATTAACAGATAAGATGCTCCTCTCAACAGAAGGTTATTTGACTTTTGAGAACATGCCTACTTCGAGTGGAGGCCTCCCAACGGGAACTCTCTGGAATGATGCAGGCACTATCAAGATTGCTTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
f53f19695d96551a9c59994662b48ae1db57e2b3a500e8432282219e243355e4
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7520
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
A major lineage of nontailed dsDNA viruses as unrecognized killers of marine bacteria Kauffman,K.M., Hussain,F.A., Yang,J., Arevalo,P., Brown,J.M., Chang,W.K., VanInsberghe,D., Elsherbini,J., Cutler,M.B., Kelly,L. and Polz,M.F. 2018-01-24 — GenBank