Protein

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Genbank accession
XYY22234.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MTKVTGSYESLIRGVSEQVAHQRYPGQHWVQDNMISDPVRGLVRRWGSVMQHELATAALPTAATAQDVQDFRETSLYLGDVEYSFMHRRKQVIAGSTASGIVVVDKTNKRILPVSVGSTDAVAQSILQTGISSITSAGRFVLLASATKPVDYTEVNTWQTDRTGVAFITVGNYSRTYSITASHTNGLTYTASYTTPSSYYPGTLDTSDISASATDYVKQVNDRVYAYQTAVNQWIGTSAAAIVPSAIVVQLVLALRAAGFPAIDVNSIDNHMVFGNVLTGLSITDGANNATVGAVFQEVEAVTDLSVRHRANKVIRISPKITSGGSGTSYYVKARQISAADTSGWPKVIWEEAAGIQVTPGFVCMLGCIQGGTFYLASTAAILQSISGVSAPNWVPSSSGDYDSQQQLAMFGKTINYMRLFQDRLMIIAGSTVLLSKTGDYFNFFRASALQLANDDPIEMYALGSDDDVITDGALLDRDLLLFGNVWQYVISGREALLPQSPYISIQSSYTDSNHCSPVSAGNLVFYTQPRDHKLTVQQMQTGAYAGTVATFEVTQQLSKYLQGSPTALVATTSPSAVFVRTTGLTNGVYVFSYLDAPGQTERLFDSWSRWTWNTALGPTVGITGKDGALLTVTLRSGIGSNLYVLDEFTLAGTLSDTPYLDSQRPGQAPGGMAVGTPLAANLSAAMNSGAGDFFLIGRPFADIGALEAEFPTLLGNVVIGANYDSLVTVTNPYMRDSDGKPILDGRLTVGNFNVTTVDSAAMKVEVQDLQTLGMETTEVLNWVARPAGAWVLNKQQVMETATMAAGVYKETRNCKVTFRSRSWLPFGLSTMEWTGQFFTRRT
Physico‐chemical
properties
protein length:843 AA
molecular weight: 90841,28900 Da
isoelectric point:5,43218
aromaticity:0,09371
hydropathy:-0,00629

Domains

Domains [InterPro]
IPR058003
TTP
1–615
IPR058003 IPR058003
DC_0058
STR
1–843
DC_0058
XYY22234.1
1 843
Architecture
STR
STR 1-843
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XYY22234.1
1 843
Domain Start End Length (AA) Confidence
N-terminal 1 195 195 0,8940
Central domain 196 394 200 0,1778
C-terminal 395 843 448 0,2663
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-195
Central
196-394
C-terminal
395-843

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage Ppr_SeaD2
[NCBI] 		3446273 No lineage information
Host Pseudomonas protegens Pf-5
[NCBI] 		220664 Pseudomonadota > Gammaproteobacteria > Pseudomonadales > Pseudomonadaceae > Pseudomonas > Pseudomonas protegens

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XYY22234.1 [NCBI]
Genbank nucleotide accession
PV763892 [NCBI]
CDS location
range 5357 -> 7888
strand +
CDS
ATGACCAAAGTTACGGGCAGCTATGAGTCCTTGATCCGTGGCGTGTCCGAACAGGTCGCGCATCAGCGGTATCCCGGCCAACACTGGGTGCAGGACAACATGATTTCGGACCCGGTGCGCGGCCTTGTGCGGCGCTGGGGTTCGGTCATGCAACACGAGCTTGCAACCGCAGCGCTGCCAACGGCGGCTACGGCGCAGGACGTGCAGGACTTCCGTGAGACCTCGCTGTACCTCGGCGACGTTGAGTACAGCTTCATGCACCGCCGCAAGCAGGTAATCGCAGGCAGCACTGCCAGCGGCATCGTTGTGGTGGACAAGACCAACAAGCGCATCTTGCCTGTCAGCGTGGGCAGCACTGACGCCGTGGCGCAGAGCATTCTGCAAACTGGCATAAGCAGCATCACGAGTGCTGGACGGTTTGTACTGCTGGCGTCAGCGACGAAGCCAGTGGACTACACCGAGGTCAACACTTGGCAGACGGACCGCACGGGCGTGGCCTTCATCACGGTCGGCAACTACTCCCGGACGTACAGCATCACGGCGAGCCACACCAACGGGCTGACGTACACCGCATCGTACACAACGCCATCCAGCTACTATCCCGGTACACTGGACACCAGCGACATCAGCGCGTCCGCTACGGACTACGTGAAGCAAGTCAACGACCGCGTGTACGCCTACCAGACCGCTGTGAACCAGTGGATCGGTACGTCGGCGGCAGCAATCGTGCCATCGGCCATCGTAGTGCAGCTTGTGCTGGCGCTGCGTGCGGCAGGCTTCCCGGCAATCGACGTGAACAGCATCGATAACCACATGGTGTTCGGCAACGTACTGACCGGCCTGAGCATCACCGACGGCGCGAACAACGCCACCGTGGGCGCAGTGTTTCAGGAAGTCGAGGCGGTAACTGACCTGAGCGTCCGGCACCGTGCCAACAAGGTCATCCGCATCAGCCCCAAGATCACCAGCGGCGGAAGCGGCACGTCGTACTACGTCAAGGCTCGGCAGATCAGTGCAGCGGACACCAGCGGCTGGCCCAAGGTAATTTGGGAAGAGGCCGCAGGCATCCAAGTCACTCCGGGCTTCGTGTGCATGTTGGGCTGCATCCAAGGCGGCACGTTCTACCTCGCCAGCACCGCAGCGATCCTGCAAAGCATCAGCGGCGTGAGCGCACCTAACTGGGTTCCCAGCTCGTCCGGCGACTACGACAGCCAGCAACAGTTGGCGATGTTCGGGAAGACGATCAACTACATGCGGCTGTTCCAAGACCGCTTGATGATTATAGCTGGCTCCACTGTGCTGCTGTCCAAGACCGGTGACTACTTCAACTTCTTCCGGGCATCCGCGTTGCAGCTTGCGAACGACGACCCGATTGAAATGTACGCACTGGGTTCCGACGACGACGTTATCACGGACGGCGCGTTGCTTGACCGGGACTTGCTCCTGTTCGGGAACGTGTGGCAGTACGTCATCAGTGGACGGGAGGCGCTGTTGCCGCAGTCGCCGTACATCAGCATCCAGTCCAGCTACACGGACAGCAACCACTGCTCCCCTGTGAGCGCGGGCAACTTGGTGTTCTACACTCAGCCCCGTGACCACAAGCTGACAGTGCAGCAGATGCAGACCGGCGCGTACGCTGGCACCGTTGCAACCTTTGAGGTAACGCAGCAGCTAAGCAAGTACCTGCAAGGCAGCCCAACTGCGCTGGTGGCGACAACCTCGCCGTCTGCGGTGTTCGTGAGAACCACGGGCCTCACCAACGGCGTGTACGTATTCAGCTACTTGGACGCACCGGGCCAGACGGAACGCCTGTTCGATAGCTGGAGCCGTTGGACTTGGAACACGGCGCTTGGGCCGACTGTCGGGATCACCGGCAAGGACGGCGCGCTGCTGACAGTGACACTGCGCAGCGGCATCGGTTCCAACCTGTACGTGCTGGACGAGTTCACGCTTGCCGGTACGCTGAGCGACACGCCGTATCTGGACAGTCAACGCCCCGGACAGGCACCGGGCGGCATGGCGGTAGGGACTCCGCTGGCGGCGAACCTGAGCGCGGCCATGAACAGCGGAGCAGGGGACTTCTTCCTGATCGGCAGGCCGTTCGCTGACATCGGCGCATTGGAGGCGGAGTTCCCGACGCTGTTGGGCAACGTCGTAATCGGTGCGAACTACGACAGCCTCGTCACCGTCACCAACCCGTACATGCGGGACAGCGACGGGAAGCCCATCCTCGACGGGCGCTTGACCGTGGGCAACTTCAACGTGACCACTGTTGACAGCGCGGCCATGAAGGTTGAGGTGCAGGACTTGCAGACGCTGGGCATGGAAACCACCGAGGTTCTGAACTGGGTGGCACGACCAGCGGGCGCGTGGGTGCTCAACAAACAGCAGGTCATGGAGACTGCAACGATGGCTGCGGGCGTGTACAAAGAGACACGTAACTGCAAGGTGACGTTCCGCTCTCGCTCGTGGCTTCCATTCGGATTGTCCACCATGGAATGGACTGGACAGTTCTTCACTCGGAGGACTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
85b033928a4f21b73252343bd2ade6f63466fab86ab99202eb1c6df5744d31dd
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,8834
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Pseudomonads coordinate innate defense against viruses and bacteria with a single regulatory system Brinkley,D.M., Bertolli,S.K., Gallagher,L.A., Tan,Y., Motha de Silva,M., Brockman,A., Zhang,D., Peterson,S.B. and Mougous,J.D. — — GenBank